BtaINT0098300 @ bosTau6
Intron Retention
Gene
ENSBTAG00000003955 | MYO7A
Description
myosin VIIA [Source:HGNC Symbol;Acc:HGNC:7606]
Coordinates
chr15:57410960-57412196:+
Coord C1 exon
chr15:57410960-57411076
Coord A exon
chr15:57411077-57412112
Coord C2 exon
chr15:57412113-57412196
Length
1036 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGC
5' ss Score
9.55
3' ss Seq
TTTTTTTTTATTTAAACTAGCAA
3' ss Score
5.67
Exon sequences
Seq C1 exon
TCCATCGTCGCCTATTTCAACAAGCACGCGGGGAAGTCCAAGGAGGAGGCCAAGCTGGCTTTCCTGAAGCTCATCTTCAAGTGGCCCACCTTCGGCTCAGCCTTCTTTGAGGTGAAG
Seq A exon
GTATGCTGTGGGTGGGTGATTCTCAGAGATGGGGAGGGGAACCACATGTTACCAGGACTCCTCCCCATGACTTGGGGAGACTACAGTGGTCTCTGCCACCTGCCTGGGACTGAAAGGAGGAAACGACCCTCAGCTTTGTCCCAGCTAGGTGTCTCAGCTAAGTACTGGGCCCTGGGCTCAGTCCTAGGACACTGAGGGGCCAGCACCTTGCCTGGCAGGGGAGGCAGATGTGTACAGAGGTTAGAGTAACAGAGGATGATCTGTGCTGGCAGTGGGGAGCCCCCATGGAGGTGGCAGAGCCTGGGAGGCCCAACCACACGGTGAAGGCTGAGAAGGCTTCCTGGGAGAGGCAGCACCTGAGCTTTCCAGGGAGACCCTGGGGGCAGTGTTCCTGGCAGACAGTCTGGCCTGAGCAAAGACCCAGAAGTGTGAGAGCTCAGGCATGGGCAGGAAACGCAAGTGGATGAGTGTGGATGGGCATGAGGTGTGAGGCGAGCAGACTGCGGTGAGAGGCAGGTAGGTTTCCTCCTGAAGGTGGTGCCCAGCCCTGGAGGGTTTTGAACAGGGTTGATGGGACCAGAGGCAGGAGAATGGAGAAGAGACTGGTGCGAGGGGATGGGCATGAGGCGTGAGGGGACAGGTCAGAATGGAGAGGAGTGGTGGCCTCACTACACACCTGGGACGGGGGCCCTTTGACACAGCTTGGCTGTGCAAGAAAGAGAGGTAGGCAAGTGCATCTAGAGGCAAGTATAGGGTTCAGAGAGGTCTTTTAAGGATGAGAGACTTTAGAGCTGAGAGAGAGAGAGACCTCAGGGACTCCTAGAGAAGAGGACAGAAGGGATGAAACTCTTGCCAGTTGCTGGGGACCCATGAAAGGATTCAGGGTAGAGCTGAGGATCCAGAAGAGGTAGAAACTTGAGGTTGTCGGGGGAGAGGCAGACTTAAGCCCAGCTGGGGGCAGCTTTATTTCTCCCCAAATGTACAAAACATTTCCTGCTCTGGGTTCCCCATCTGACTTTTTTTTTATTTAAACTAG
Seq C2 exon
CAAACTACAGAGCCAAACTTTCCTGAGATCCTCTTAATTGCCATCAACAAGTATGGGGTCAGCCTCATTGATCCGAGAACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003955:ENSBTAT00000005191:44
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0037313=FERM_M=PD(31.5=89.7)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCATCGTCGCCTATTTCAACA
R:
TGGTTCTCGGATCAATGAGGC
Band lengths:
199-1235
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development