RnoINT0097405 @ rn6
Intron Retention
Gene
ENSRNOG00000013641 | Myo7a
Description
myosin VIIA [Source:RGD Symbol;Acc:628830]
Coordinates
chr1:163003367-163004324:-
Coord C1 exon
chr1:163004208-163004324
Coord A exon
chr1:163003451-163004207
Coord C2 exon
chr1:163003367-163003450
Length
757 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGT
5' ss Score
9.79
3' ss Seq
GCCTCGACTTTCTTTGCTAGCAA
3' ss Score
4.88
Exon sequences
Seq C1 exon
TCTATTGTCGCCTACTTCAACAAGCATGCAGGGAAGTCCAAGGAGGAGGCCAAGCTGGCCTTCCTCAAGCTCATCTTCAAGTGGCCCACCTTTGGATCAGCCTTCTTTGAGGTGAAG
Seq A exon
GTATGTCTTCAGGGATCTTCTGAGGGCAGGTAGGGGTAAAAGGTCGGGAGCGAGGCAGCACAGAAACTGGAATGGAGGTGACAGCCACTGCCTTGAACACCTGCTGGTACAAGGAGGAGGGGAGCATCCCTAACCCTGGTCCACTAAGGATGACCAGAACTTGGGCTCCAAAGAGAGACAGCCATGTAAACAGACTGGAGTAATGGAGAGTGGTTTGTACTGTAATAGTGGGCCCCGTGAGGTAGCAGAGCCAGGAGGTTATCTAGGCTGACTTCCTGGAGCAGGTGATGCTGGGTTTTCCAGGAAGTCCTTTGTACCCTATATAGACAAAGCCTACAGGCCTGAGAGCTCAGGTCTGGGCAAGAAATGAAAAAGGTTAATGCAGCTGATTGTGGTGAGAGACAGGGTGTCAAGCCAGTGAGGGTCAGGGTCTTCTCCTCAGGGGACAGTGAGACTGGGAGGTTTGGGACTGGGGCAAGAGTATCACATGGCTGTTCTGACCATTGGGAAACTTTCAGATTGAGAGAAAGGATGTAGTAAAAACTCCCAGGGAAGCAAGAGGGAGAAGATGTAACCGATTCTTGGGACCCATGAGGCTGTGGGCAGAGGGGGAAGCAGGAGGCCTTGGCAGGGCTGGCTCCATGTAAGCAGCCAAGCCAGGTTGGTTTTGTCCAGGCTCAGCTGGCTTCGTGCCTCCCTGCAAACTCCCGTCTTGCTCTGCACTCCTGTCTGATGATGCCTCGACTTTCTTTGCTAG
Seq C2 exon
CAAACGACAGAACCAAACTTCCCAGAGATTCTCTTAATTGCCATCAACAAGTATGGGATCAGCCTCATCGATCCCAGAACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013641:ENSRNOT00000019053:46
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0037313=FERM_M=PD(31.5=89.7)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTGTCGCCTACTTCAACAAGCA
R:
CTTGGTTCTGGGATCGATGAGG
Band lengths:
198-955
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]