DreINT0101101 @ danRer10
Intron Retention
Gene
ENSDARG00000044632 | myo7ab
Description
myosin VIIAb [Source:ZFIN;Acc:ZDB-GENE-091110-4]
Coordinates
chr21:22270047-22270378:+
Coord C1 exon
chr21:22270047-22270163
Coord A exon
chr21:22270164-22270294
Coord C2 exon
chr21:22270295-22270378
Length
131 bp
Sequences
Splice sites
5' ss Seq
AAGGCGAGT
5' ss Score
2.72
3' ss Seq
GGTTTAATATTCATCCACAGCAA
3' ss Score
6.47
Exon sequences
Seq C1 exon
TCTGTCGTCACACACTTTAACAAGCATGCTGGGAAATCTCGAGAGGAAGCAAAACTCATGTTTCTGGAAATCATTTACAAGTGGCCTACTTTTGGATCTGCCTTTTTTGAAGTCAAG
Seq A exon
GCGAGTTTGTCATATTATGATGCAATTGTTTGTAAATTGCTGTGAAAATAAATTACAATACATTTAAATAAATTACATTGATGCAAGGATTTGATCTGTAAACTGAAGTGTGGTTTAATATTCATCCACAG
Seq C2 exon
CAATCGTCAGATCCACATTTCCCAGAAGTCCTCTTGATTGCGATCAACAAGCTTGGTGTTACTCTTATTGACCCGAAAACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000044632:ENSDART00000148019:43
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0037313=FERM_M=PD(31.8=89.7)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTCGTCACACACTTTAACAAGC
R:
TTTCGGGTCAATAAGAGTAACACCA
Band lengths:
194-325
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]