DreINT0101056 @ danRer10
Intron Retention
Gene
ENSDARG00000099871 | myo7aa
Description
myosin VIIAa [Source:ZFIN;Acc:ZDB-GENE-020709-1]
Coordinates
chr18:3180811-3181099:+
Coord C1 exon
chr18:3180811-3180927
Coord A exon
chr18:3180928-3181015
Coord C2 exon
chr18:3181016-3181099
Length
88 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
3' ss Seq
TTTCTGTACTCTCATCGCAGCAA
3' ss Score
7.63
Exon sequences
Seq C1 exon
TCGATTGTGGCGTACTTCAACAGGCATGCTGGGAAATCAAGAGAGGAAGCCAAGCTGATGTTTCTGAAGATCATTTTCAAATGGCCCACGTTTGGTTCAGCCTTTTTTGAAGTTAAA
Seq A exon
GTAAGTTTAAACTTGCTGTTATACTGCTCAATGTGTGTTTCTTATACGCTCCAGGTTTTAATATTTGTTTTCTGTACTCTCATCGCAG
Seq C2 exon
CAAACCACTGAGCCGCACTTCCCTGAGATCCTGCTGATCGCCATCAACAAATATGGAGTCAGTCTGATCGACCCCAAAAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000099871:ENSDART00000166980:44
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0037313=FERM_M=PD(31.5=89.7)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGATTGTGGCGTACTTCAACA
R:
TTGTTGATGGCGATCAGCAGG
Band lengths:
167-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]