BtaINT0098342 @ bosTau6
Intron Retention
Gene
ENSBTAG00000039803 | MYO7B
Description
myosin VIIB [Source:HGNC Symbol;Acc:HGNC:7607]
Coordinates
chr2:4824740-4825467:-
Coord C1 exon
chr2:4825324-4825467
Coord A exon
chr2:4824896-4825323
Coord C2 exon
chr2:4824740-4824895
Length
428 bp
Sequences
Splice sites
5' ss Seq
GAGGTCTGT
5' ss Score
5.39
3' ss Seq
ACCTGTGCTGCCGCCCACAGGTA
3' ss Score
11.61
Exon sequences
Seq C1 exon
GTACATGGGTGACTACCCCTCTCGGCAGGCCTGGACCTCCCTGGAGCTCACCGACCAGATCTTCTCATCAGCCCTCCAGGAGGCCGTCCTGCAGGATGAGGTTTATTGCCAGATCCTGAAGCAGCTGACGCACAACACCAAGAG
Seq A exon
GTCTGTGGGCAGCAAGGAGGGATGGAAGGCAGTGGGCACAGGGTTGCTGTGCCCGGGGCCCCCTTGGTCCTTCCCCCAGCCCCCACCTCGTAAAGGCAGCCTTCGTTGTAACATTGTGGCGGGGGGGGGGGGGTGTTGGGACTTCTTGCCCTGAGCCATGGCTCTCCGACCCTGTCTCATTTGTCCCCTGGCCTCTCTAAACCTCAGTGCTCTCCTTCACAAAATGGGCATGATAGCACTCCCTCCCTTCCTGTGAGCAGGAAGGCTTTGGTGGCATTGGCAGCAGGGCAGTGGCCTCCTTGCCCAGGGCCTCAGGCAGGGCCCTGCTCACATGATAATCCTACAAAGAGCCCCATCTCCCTGCAGTGCTGGCGGGCCGGGCCTCCAGGAGGGGCCCCTCCTGGGCTGACCTGTGCTGCCGCCCACAG
Seq C2 exon
GTACAGCGAGGAGCGGGGCTGGCAGCTGCTATGGCTCTGCACCGGCCTCTTCCCACCCGGCAAGGCGCTGCTGCCGCACGCCCAGAAGTTCATAGACACGCGGAGAAGGAAGGTGCTGGCCCCTGACTGCAGCCGCCGCATCCAGAGGGTCCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000039803:ENSBTAT00000061382:43
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.057
Domain overlap (PFAM):
C1:
PF0078412=MyTH4=PU(34.6=75.5)
A:
NA
C2:
PF0078412=MyTH4=FE(48.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGACTACCCCTCTCGGCAG
R:
CTCAGGACCCTCTGGATGCG
Band lengths:
292-720
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]