MmuINT0104618 @ mm10
Intron Retention
Gene
ENSMUSG00000024388 | Myo7b
Description
myosin VIIB [Source:MGI Symbol;Acc:MGI:107709]
Coordinates
chr18:31965510-31966359:-
Coord C1 exon
chr18:31966206-31966359
Coord A exon
chr18:31965666-31966205
Coord C2 exon
chr18:31965510-31965665
Length
540 bp
Sequences
Splice sites
5' ss Seq
CAGGTCTGC
5' ss Score
5.61
3' ss Seq
TTATGGGTGCTACCCCACAGGTT
3' ss Score
7.66
Exon sequences
Seq C1 exon
CCATCCTCAAGTACACAGGTGACTACCCTTCCCGCCAGTCCTGGCACAGCCTGGAGCTCACAGACCAGATGTTCTCGTTAGCCCTGCAGGACCCAGCCCTGCAGGATGAGCTGTACTGCCAGATCCTGAAGCAGCTGACCCACAACTCCATCAG
Seq A exon
GTCTGCCAAAGGGTAGCCTCCTGTTCTGGGCGCTGGGATATGCCTCTGCTAGGGGGAAACAGCCACATATCCAGCAGCCAAAGCAGCCATGCTAAGTCCAGGGCCCAGTGTGCTCTGCTAGTATCTGAGGGTGGGTGACAAAGGAGGGATATCCCAGGCTTGTACCTTGCCCACTGCCTTTCTTCTCTGTGGCCTGGGCAGACTGTGGCCTGTCTGAATCCATTTCCACAAGACAGACAGGGCCACCCATCTTGTCATCCAGGCATGAAAGTGCCCTGTTGCCCTGGGCCAATGGATTGCAAGCTGGCACAATGTAGCCTCAGTGTGTACTGCATGCCCTCCCCGCTTCCCACCCAAGCTCCCAAACCCACGGGCCCAAGTGTCCCATTTCTGCTTCTGAGGTGTTTGTTTGGCCTTGGCACAGCACAGGGCCTCACCACAGATGGGTACTACTACCCCACAGGCTCAGTGAAGAGCTGGGTTGTTTGCTTGGCCTGGGCACAGCACAGGGCCTTACCACTTATGGGTGCTACCCCACAG
Seq C2 exon
GTTCAGTGAAGAGCGAGCTTGGCAGCTACTCTGGCTCTGCACAGGTCTCTTCCCACCTGGGAAGACATTGCTGCCCCACGCTCAGAAGTTCATAGACTCCCGGAAGAAGAAGCCGCTGGCTCTCGACTGTAGCCGCAGGCTCCACAGGGTTCTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024388:ENSMUST00000134663:37
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.019
Domain overlap (PFAM):
C1:
PF0078412=MyTH4=PU(34.6=71.2)
A:
NA
C2:
PF0078412=MyTH4=FE(48.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATCCTCAAGTACACAGGTGAC
R:
CTTAGAACCCTGTGGAGCCTG
Band lengths:
310-850
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types