DreINT0015012 @ danRer10
Intron Retention
Gene
ENSDARG00000044441 | MYO7B (1 of 2)
Description
myosin VIIB [Source:HGNC Symbol;Acc:HGNC:7607]
Coordinates
chr6:28105790-28107698:+
Coord C1 exon
chr6:28105790-28105943
Coord A exon
chr6:28105944-28107542
Coord C2 exon
chr6:28107543-28107698
Length
1599 bp
Sequences
Splice sites
5' ss Seq
CCGGTAAAC
5' ss Score
4.81
3' ss Seq
GCGTGTTCTTTCTCAATCAGGTA
3' ss Score
9.42
Exon sequences
Seq C1 exon
CTATTTTGAAGTATATGGGTGATTATCCCACCAGACAGGTTCAGAGCCCTCTGGAGCTCACAGATCAGATCTTTGGCCCACCTACACAAAATGAGGAGCTCCGAGATGAGATCTACTGCCAGATCATGAAGCAAATGACCAGCAATAACAACCG
Seq A exon
GTAAACAGCATATTACTTGCTTTAATGTCATATGCTACTATTCAAGCTTTTCAAGTTTGTTTTCCTTTCAAAAGAGTTTTTGGGAGTAGTCTCTTGTACTTTTCAGACAAGGGTGCGGTTACTTAATAAAAAATGCTGTAAAACATTATTATTACATATACATAAATATTATTAGTTTCAAATTGCTTTGAAATTAATGTAATGACAAAGATAAGTTTGCACTACTTTAAATCAGTTTAATGTGCTGATTCTATGATTATGAAATGTTTCTTGTCATTTTCAAAGTTGTTTCAAAGCCAATGTTTTTGCGAAAGCTGCGATGTATATTTTGTCAGGGCTTATTAATAATTGGAAAGTTCAATCTTGCTACAAAAATACAAATAAATAAACTTACTCACCCCCAGTTTTTGAATGATTGTGTAAATGCAAACTGCAAATTAAAGTGGTACATCTGTTGAAATCATTATTACTTATGAACTTGGTACAAAGTGTTGACAGACACAATTGCACAATAATTCTGTGCAGTTTTCCTTTTGGGACTGTAGTTGAACCAAAGTCATCTTGCCCTTTATAACAGTGAAAAATCATGTGCAACCTTTAGCTCCTTTATGCTTTAAGTTAAATTAATAATAATAATAATAATAATAATCATTATTTTGTAAGTTTTATCAATAATGGTATAAGAATTAAGTTTGAAGCATTATTAGTATTTAAGAGCAATGCACTTTACTTGTTTTTCCCCCACATCTAACCATATTTCCTGCTAATGCTTCCCTAATCATTATATTCAATATAGGTGGCTGTTTTCTGTCTAAAAGCTTTACAACACCACTAAATGGTTAAAATTTCAAGAACTTTCCTCTTACAATGAGAATTTCAGTTTCAGATGCCAGTTTGTTGTCACTGTGAAATGACATAAGCTAATGCACAGTTCAGAAAAAGACATGGTAAAGCTTCAGGTCAGCAACCCTAATTGTTTACAAAAGTAAGAGAGAAATAGCCTGAAATAGTCAGTATGAGATTTGATTTTTTAATTTAAACTCTGTTTGATGTTTAATATTTTTCTTGCAGAAGGATGACATTTAACTTATTTACATTTAACAATTTAGAGTAACCTGTTACCCTTATTCTTCAATGTGGAACTGTGCTTGTATTTAAAAAAAAAAAAAATTTGCCATTATTTTAAAACTTTCGATTCAGTTGTCTTTGGAATAAATGATTAGGAATAATAAACAGCAGAAAACGGTCAAACTACTTGCTCTATAAACAAGTGTATTTATGACTAGACATAAAAAGTATAATATTATAATAAGAAAATATCAGTTTGCAACATCAAACAGCAGAAAAAGACATTTTTTAAACATCTGAAAAATAAATGGAAGTAAATGAAACCAGAAGTTTTGAGCCAAACAGATTCCAATGACTGAGCCCACTCATACTTCAAGAATAAGGTCAATACACACTGTACCTTTCACCATCAGCTCTGTTGTATTCAGTTGTATTCACATCAGTATAGTGCAGCTTAATATCTTATCACTTAATATTAATTTCTAAGAAAAAATGATCATTTGACACTTCTGCGTGTTCTTTCTCAATCAG
Seq C2 exon
GTACAGTATAGAGCAAGGCTGGCAGCTGCTGTGGCTTTGCTGTGGTCTTTTCCCTCCCAGTAACTCTCTAATGAAACATGCTCAGCGTTTCATTGAGACACGCAAACGAGAGCCATTGGCCACTGACTGCCTTCAGAGACTGCAGGGGGCTCGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000044441:ENSDART00000143218:38
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.192 A=NA C2=0.057
Domain overlap (PFAM):
C1:
PF0037313=FERM_M=FE(10.7=100),PF0078412=MyTH4=PU(34.6=71.2)
A:
NA
C2:
PF0037313=FERM_M=FE(10.9=100),PF0078412=MyTH4=FE(48.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGAAGTATATGGGTGATTATCCCA
R:
GAGCCCCCTGCAGTCTCTG
Band lengths:
302-1901
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]