RnoINT0097443 @ rn6
Intron Retention
Gene
ENSRNOG00000015035 | Myo7b
Description
myosin VIIb [Source:RGD Symbol;Acc:1561153]
Coordinates
chr18:24752647-24753484:-
Coord C1 exon
chr18:24753331-24753484
Coord A exon
chr18:24752803-24753330
Coord C2 exon
chr18:24752647-24752802
Length
528 bp
Sequences
Splice sites
5' ss Seq
CAGGTCTGC
5' ss Score
5.61
3' ss Seq
CTGCTGGGTGCCGCCCACAGGTT
3' ss Score
8.33
Exon sequences
Seq C1 exon
CCATCCTCAAGTACACAGGCGACTACCCATCCCGGCAGTCCTGGCACAGCCTGGAGCTCACAGACCAGATGTTCTCGCTAGCCCTGAAGGAGCCAGCCCTTCAGGACGAGCTCTACTGCCAAATCCTGAAGCAGTTGACCCACAACTCCATCAG
Seq A exon
GTCTGCCAAAGTGTAGCGTCCTGTGCTGGGCCCCGGACTAGGCCTCTGTTAAGGGGAAACAGCCACATATAGGTCTGGATCCACATCCCGCAGCCAAAGCAGCCACCAGAAGTGCAGGTCCCTGTGTGTTCTGCTAGTATCCAAGGGTGGGTGACAAAGGAGGGACAGCCCAGCCTTGTACCTTGCCCACTGCCATTCTTCTATGTGGCCTGGGCAGACTGTGACCTGTCTGAACCCCTTTCCATAAGACAGACAGGGTCACGCATCTTGTCATCAGGGCAGGAAAGTGCCCTGTTGCACTGGGCAACTGTATTGCAAGCTGATATAATGTGACCTTGGTGTGTACTGTGTGCTCCCCCCAACCCCATCCAAGCTCCTGACCTCACAGGCCCAAGCGACCCATTTCTGCTTCTGACATGCTTGTTTGGCCTAGGCACAGCACAGGGCCTTACCACAGCATAGGGCCTTACCACAGCATAGGGCCTTACCACAGCACAGGACCTTACCACTGCTGGGTGCCGCCCACAG
Seq C2 exon
GTTCAGTGAAGAGAGAGCCTGGCAGCTACTGTGGCTCTGCACAGGCCTCTTCCCACCTGGCAAGGCGCTGCTGCCCCATGCCCAGAAGTTCATAGACTCCCGGAAGAAGAAGCCACTAGCTCTCGACTGCAGCCGCAGGCTCCACAGGATTCTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015035:ENSRNOT00000021405:37
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0078412=MyTH4=PU(34.6=71.2)
A:
NA
C2:
PF0078412=MyTH4=FE(48.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATCCTCAAGTACACAGGCG
R:
CTTAGAATCCTGTGGAGCCTGC
Band lengths:
310-838
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]