BtaINT0098354 @ bosTau6
Intron Retention
Gene
ENSBTAG00000039803 | MYO7B
Description
myosin VIIB [Source:HGNC Symbol;Acc:HGNC:7607]
Coordinates
chr2:4883377-4885107:-
Coord C1 exon
chr2:4884994-4885107
Coord A exon
chr2:4883531-4884993
Coord C2 exon
chr2:4883377-4883530
Length
1463 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGG
5' ss Score
7.61
3' ss Seq
TGATGTGTTCAATCTTTCAGGGG
3' ss Score
9.41
Exon sequences
Seq C1 exon
GCCCCGGAGGAGCGGAACTACCACATCTTCTACTGCATGCTCCTGGGGATGAGCGCCGAGGAGAAGAAGCTGCTGTGCCTGGGGACGCCCTCGGAGTACCACTACCTCACCATG
Seq A exon
GTGAGGCGCCTGCCCCCTCCCCGACCCTCCTCCCCTTCCCACCTCTCCCTGCCCTGCCTCTTACAATGAGGAAGAAGTAAGAAGGGCCAGTTCTTGCTCAGCGTTGGTTTACAGCCTCATAAAAGCCCAGACTCCGGGTAGGCCCCTGGGCGGGGACTGGGGGCTCCCTTTCCCCTTCTCCACCCCTCCCTTCTGTGTTTGACATCCACGTTACAACCACCAGAGGATTACTCTTGACCATCAGAGCCCTACCCTTGTCCATGTGCTTCCTTGTTTTCTGCAGAGCCTACAGTCCTGCCCCACAAGCCTCACCTTCCTTTGGTTCCTAATGGACAGAAGGCTCCTGGCCACCCTATAGCCCCTGCCTCATTTCATCCCAGTCACCGTCCTCCTGGGTGCCCCTAGAACTTGAACTCCAGGAGAGCAGAGGCCTTGCTCAGTTGTGTCCCCATGCCTGGAACATTGTCACACAAGCAGTCTCACAAGTTGGGCTTGCATTGTTGACAAGAAAATGAATGAGATCCACCTCTTGACGTTCTCTCCTGCCTCACCCCTGTCTCCTCTGTCTCTGCCTGAGGACTTTATCATCTCTTGCCTAGACCATGGTGCTACTTTCCTACTGGGTGCCCCCTCTCCCCAGACTTCAGCCCCAATCTATCATCCACCCCCCAGATCTCCCATACAGGGCGCCTGGCAGACCATATTCCTGGTCACAGCTCTTTGGAAGTTCCTTGTGGCTCCTTGGCAAGGTTTCCAAGTCCCTCCAGATCCCACCATCTGCCAATCTCTCCTCCTCCACATGACCCCAGCCTCTTTGCAACCTTCCTGCCTCCCATCTCACAGCCTAACTCAAGCTGTTATCTGCCAAAACCCTCTCTCCCTGTGCTACTATAAAGCTCAACCTGTGGAACCAGCTCAGGTGCCTCCTCCAGGAAGCCTTTCCCCAGTTCCCAGGAGGGCTGGCCAAGCCCCCTTTTGTCTCAGCGTCTGTAAAAGCCTATGACATAATCTTTCTGCCTCCTCTCCTGGATGCAACAGCATGCAGAACAGGGCCCGCTCTCTCCATTAATGAATTCCCAGTAAGTACCCCAGGGTCTGACACACAGTGAGCCTTAGAAGGTGTTTGTTAAAGGAATTAACCCAAGGTATTCCCCCGAGAGACTGAGGCAGGCATTACCATGGATGGTTGACAAGCAGAGGCTCAGAGAAACTGAGTGACTTAGCTATGGCCACACAGCTATCAAGCTACTATAGAATTCTGGGTCTATATCACCATAATTCTGCCTTTGGAAATACCTTTGTGTATTTTATGAGTGTGGTCCTCCAGGTGGTCCCATGGGACCCACCCAGAGCCAGTGAAGTATCACTTACCAGGGGCCTTTGGCTGAGTCCCTGATACATCCCTGCCTTGCTGGCCCTACAGTGGAGAAGGCCCCCCAAAGCTGATGTGTTCAATCTTTCAG
Seq C2 exon
GGGAACTGTACTTCCTGTGAGGGGCGCAATGATGCCAAGGACTATGCCCACGTCCGCTCGGCCATGAAGATACTCATGTTCTCTGACTCGGAGAACTGGGACCTCAGCAAGCTGCTGGCCACTATTCTCCACCTGGGGAATGTGGAGTTCATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000039803:ENSBTAT00000061382:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.6=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(7.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGGAGCGGAACTACCACAT
R:
CCATGAACTCCACATTCCCCA
Band lengths:
263-1726
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]