RnoINT0097458 @ rn6
Intron Retention
Gene
ENSRNOG00000015035 | Myo7b
Description
myosin VIIb [Source:RGD Symbol;Acc:1561153]
Coordinates
chr18:24793842-24795822:-
Coord C1 exon
chr18:24795709-24795822
Coord A exon
chr18:24793996-24795708
Coord C2 exon
chr18:24793842-24793995
Length
1713 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGC
5' ss Score
8.27
3' ss Seq
CTGGGGTCCTGTTCCTGCAGGGA
3' ss Score
9.03
Exon sequences
Seq C1 exon
GCTGCGGAGGAACGGAACTACCATATTTTCTACTGCATGCTGATGGGGATGAGCCTGGAAGAGAAGAACATGCTGGGTCTGGGCATGCCCTCTGAGTACCACTACCTGACCATG
Seq A exon
GTGAGCCCCTCCTTCCCCTTCCCAACTCGCTCCTCGGAAACAAAGGGAGGGAAGAAAAGGCTGGCACATGGTCAAAGCTCAGCTCAGTCTCGGCTGCTGGGATCCTTCTCTAGCTGGGCCCTGATGACTGTTAGGTCTCCATCCTTCCTGTTTGGAAGTGATTTTTATGACCACCTTTATGGCCTGCTTCCTATTTCCCTTCTGCTCCTTGTAATCCTGGAGCCCCAGGCTAAGGTTCTGGTTCTTTTCCACTTACACTATCTTCTTCTGAATCCCTCCATGCTTACGAGAGTCTCCCAGCACAGTGGGGGACAGATTGTTATCCATAGACTCTTGAATCCATCCTTGTCAGTTCAAACAGACTCCAAGCTCTCAGAACATGAGTCTTGCTCTCCCTCATCTCTCCTTTCCAGGACAGTGAAATTCAAGCAGATATGGGCTTGCATTAGTTAATAAGGGGGTGACATATTCTACCCATGGATCAGTTTCCTATATTACCTGTGGTCACTACCTCAAAGTCTTCACCAGTCCTTTCGTAGAATGTGGCAGTAGTTTTCTTTTGGGTTGTCCCTTTGACCAACTTTGTCCTCTGATCTATCAATCATCTCACAGAGCAAACCCTCTGGTAGCAATTAATCACTTTAAGTTCAAGACCTTTGACATAGCTTTGTACTTGTCAAACACCTGACCTTCCTTGCAGCAATCCTTGGATCCCACCTCCCACCTCTGTCTCACCAACCTTTGCCTGGCTTAGACACTGTCTGTGGGGACCTCTCCCTATCTTCCAGTAGGGCTAGCTTTGGTCTCTTTGGTCTTAGCACTGGTAATAGTTAAGGGTCACTGGTCTCTTACCTTCTTAGATATACAGTAGCTGTGAAGAACCACAGGTCATTAGTTCATAATTCCTAGCAAGGAGCACAGGTCTTGATAGGTAGTCAGTCATGAGAAGTGCTTCCTGTGAGAATGAACTCACAGTATTCCCCAGAGACAAGCCAGGCAGGCTCAAGATGAATGGATGACAAATGGAAGCCCAGAGAGGGGACTCACTCACGGTCATTCAGTGCTGCCAGCAAAGCCCAGGTGTTCTTTGGCTGAGGTGCCGCCAGAGCTGGATGTCGTGGTTAGAGCCTGGGCCCAGGCAGTTCTAACAAGCTGGTCTCAGCCACTTACCTTCAACGAGCTAATCCAACAGACAAGAGACCATGGACAAAGCAGCGTCCTCCAGGCCAGTCTGTACTTGGGATCCTGACAGGAAATACAGTTTTCAATGGAAGACAAGAGCTATGCATAACTAAGCAGCCTTGTCTTGGTTTCAGTCATTCTGAGAGGTAGTGTGACAAGATGTTAAAACTGTGGGAAATCTCTTCCGGGGAGACCGTCTCTTCCTCTGGCTGCCACTAGGCCTTCTCCTAGAAGGAAATTCCTGGAGACATTCTAGTTTCTTGAGGTCCGTTTTCAATAGTCTGAAATCAAATGACAGGCGCCAAGTGTCTCCCTTGAGCATCTCCATGTGGATTAGCCTTTGGAAATCCCGTCATTTGTTTCCTCAGCTCGAATACATGGATGTTGCCTTTCAGGGTCCACCCAGGGCTTAGATGGTGACTTTTTCGGGACCTTTAACTAAGTTCTTGAGTCCTCTTGGCCTTGCTGGCTCCTGGTTGGAGGGGGATGAGATCTGGGGTGTCTCTCTGAACTGGGGTCCTGTTCCTGCAG
Seq C2 exon
GGAAACTGCACCTCCTATGAGGGGCTCAGTGATGCCAAGGACTACGCACACGTTCGCTCGGCCATGAAGATCCTCCAGTTCTCGGACTCGGAGAACTGGGACATCAGCAAGCTGCTGGCAGCCATCCTCCACCTGGGGAATGTGGGGTTTATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015035:ENSRNOT00000021405:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.4=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(7.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGGAGGAACGGAACTACCAT
R:
TAAACCCCACATTCCCCAGGT
Band lengths:
262-1975
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]