DreINT0015026 @ danRer10
Intron Retention
Gene
ENSDARG00000044441 | MYO7B (1 of 2)
Description
myosin VIIB [Source:HGNC Symbol;Acc:HGNC:7607]
Coordinates
chr6:28073125-28075423:+
Coord C1 exon
chr6:28073125-28073238
Coord A exon
chr6:28073239-28075269
Coord C2 exon
chr6:28075270-28075423
Length
2031 bp
Sequences
Splice sites
5' ss Seq
ATGGTATTG
5' ss Score
2.77
3' ss Seq
TTGTTTTTGTATTGGTTTAGGGT
3' ss Score
9.39
Exon sequences
Seq C1 exon
GCATCGCAAGAGAGGAACTACCACATTTTTTACTGTATGCTCATGGGAATGCCTGCTGACCAAAAGAAGATCCTGTCTTTGGGAAATGCTGCAGAATACAACTATCTCACTATG
Seq A exon
GTATTGATCTATATTTTGATTGCTATTCCAACTTTTCATGTCTATTTATGTTTTCATAAAAAAATTTCTTGAGAGAGAGAATAAACATATACAGCTGAAGGAAAATATTTTTTAATTGATTTTAATTTCTCTTAAACCATTTTCGCCTGTATGGATATATTTGATACTATTGTTGTCTTAAACTGTTTGTGCTGGGGAAGGGGGGGGGGGTGTTTTCATCCACTCTGGAGTGATTTTGAGTTTTAATTTGGCCATAACGTTTTCGGTGTTTCAGCTAGCATGATGATTTTTGGTGACAAAGCTTATTTTGATACAGATTTAGAAAAAAATGCTTTAAATTGTGTTAAAAACTCCAAAAATACACTCTGTGCAAATTTTACAACGAAACTTCTACTATTTTAACTCTTTAACTACCAAATTCTTTTATAATGTCACTGGTTTGGTGAAAAACTCGAACAAATTGACAAATTTTCAATATAAAAAGTAATTGTGGACTGAATTTTTTACCTTTTATAACAGTCTTGGACATGTGAAACAACACTGCCTTTGATGCATTGTTTTTGGCTGAATTAAAAAAAAAAAAGTAAAAAATCCCTAATTGATGAGGCAGTGGCGCAGTAGGTAGTGCTGTCGCCTCACAGCAAGAAGGTCGCTGGTTCGAACCTTGGCTCAGTTGGCGTTTCTCTGTGGAGTTTGCATGTTCTCCCTGCTTTCGCGTGGGTTTCCTCCGGGTGCTCCGGTTTCCCCCACAGTCCAAAGACATGCGGTACAGGAGAAATGGTTAGGCTAAATTGTCAGTAGTGTGTGTGAATGTGTGTGGATGTTTCCCAGAGATGGGTTGCGGCTGGAAGGGCATCTGCTGCGTAAAAAACTTGCTGGATAAGTTTATTCATTCCGCTGTGGCGACTCCGGATTAAGAAAATTACCGACAAGAAAATTAATGAATGAATGGATCTCCCTAATTTTTACTTTTGGTGGCTGTTTTTTGCCCCATTGACTTCTATTATAATACATTTTTTTTATAACAAAACCATGACAATATAGTCATGAATTTTTGATGATTGGTGGTTTACTCTGTTGGGAAGAGGTAAAATTTGTCAATTTTACTGTTGATCATCAGTTGGCATCATTAACCCTTTAGATAGGCCTGTGCAAAAATGTTTCTGGATTTTATACGGAGTATAACAGCAAATAAAAGTGTGTGTATGTGTGTCTATAAGTGTAAAAGTGACCTTTGCGCACTTACTTTGATGTGTCTGAGAAAATCAGATTATGCATCTTAGCTCTCAGAACTACATGGAGTAAATAAAAACAAAGACTATGTATTTATGCAACACCAAATGTGGTTATAATGGAAGTCAATGGGGCAAAAACAGTCACCAACAGTAAATGAGGGACAAAAATTTTAAATCTAACAATGCATCAAAGCCAATGTTGTATTTGGCAATAAAAGAGTTAAAATCCTGTAATTTTCTAAGCAATTTAGTAGTTTTGATCAGGACTAAGATTTATTAACAGATTAATGCAAAAAATGTGAAAAAAAGAACATTTATCTGATGCATTTTTACAGCGGTTTAATTTAGTGGATAATTTCATCCCGAACATAACAAAAGGGTAGTAAACTTGAACAGTGCACAAGGGTTTAGAGAAGGGTACACCTTTTTTGCAATATCATGTCATTCATCTCCAGACGGAGAATCATCCTTCAGTCAATTCTATAATGCAGTTTTAAGGTCAATATTATTACTCCCCCTTAACAATGTTTTTGAATTAGCTACAGAAAAAACACTCTTATCTTTTCCAAAGACCTAATTAATTTAGTTAAGCCTTTAAATTGCACTTTGAGTTTTGTCAAATATTATTAACTGTCACATGGCAAAGACAAAAGAAATAAGTTATTAAAACTGGTATCTTTTAAAAATGTGTTTAAAGAAATCTCTCCATCAAACAGCACTTGGAAATTATTATTTAAAAACAAACTAAAATTTCACAGGGGTATGTTTTATTTGTGTTGTTTTTGTATTGGTTTAG
Seq C2 exon
GGTAAGTGCACTTCGTGTGAAGGGCGGGACGACATAAAAGAGTACGCCAGCTTTCGTTCTGCAATGAAGATCCTGACATTCACAGAGAATGACACATGGGAAATTAACAAGCTTCTGGCCTCCATCTTGCACCTGGGAAACGTAGACTTTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000044441:ENSDART00000143218:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.4=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(7.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]