BtaINT0100316 @ bosTau6
Intron Retention
Gene
ENSBTAG00000047061 | NDOR1
Description
Bos taurus NADPH dependent diflavin oxidoreductase 1 (NDOR1), mRNA. [Source:RefSeq mRNA;Acc:NM_001046158]
Coordinates
chr11:105887035-105887319:-
Coord C1 exon
chr11:105887221-105887319
Coord A exon
chr11:105887137-105887220
Coord C2 exon
chr11:105887035-105887136
Length
84 bp
Sequences
Splice sites
5' ss Seq
GGGGTGAGT
5' ss Score
7.93
3' ss Seq
GTGTGTACCTGATTCTGCAGGCC
3' ss Score
8.09
Exon sequences
Seq C1 exon
GTTCAACTTCGTGGCCAAGAAGCTGCACCGCCGGCTGCTGCAGCTCGGGGGCAGCGCCCTCCTGCCCGTGTGCCTGGGCGATGACCAGCACGAACTGGG
Seq A exon
GTGAGTGGGTTGGGGGTTGGGGGTGCCCTCCTGCGGGTCCAGCTGGGAGCAGGTCCCCAGAGGGGTGTGTACCTGATTCTGCAG
Seq C2 exon
GCCCGATGCCGCCATCGACCCCTGGCTGCAGGATCTGTGGGAGAAGGTGCTGGGGCCGCACCCTGTGCCTCTGAACCTTGACCTGAGCCCTCCTGGAGTCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000047061:ENSBTAT00000066145:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0025820=Flavodoxin_1=FE(23.9=100)
A:
NA
C2:
PF0025820=Flavodoxin_1=PD(5.8=22.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAACTTCGTGGCCAAGAAGC
R:
TCAGGTCAAGGTTCAGAGGCA
Band lengths:
183-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development