RnoINT0099544 @ rn6
Intron Retention
Gene
ENSRNOG00000010616 | Ndor1
Description
NADPH dependent diflavin oxidoreductase 1 [Source:RGD Symbol;Acc:1308479]
Coordinates
chr3:2469505-2469786:-
Coord C1 exon
chr3:2469688-2469786
Coord A exon
chr3:2469607-2469687
Coord C2 exon
chr3:2469505-2469606
Length
81 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
3' ss Seq
ATGTCTGTACTCTTTCCTAGGCC
3' ss Score
9.85
Exon sequences
Seq C1 exon
GTTCAACTTTGTGGCCAAGAAGCTCCATCGCAGGCTGCTGCAGCTAGGAGGCAATGCCCTCGTGCCTCCGTGTCTGGGTGACGACCAGCATGAGTTAGG
Seq A exon
GTAAGTGTTGATGGCAGCATCCCTCTGTGCACCCCATCTTGGCACGGGCCCACAGAGGCCAATGTCTGTACTCTTTCCTAG
Seq C2 exon
GCCCGATGCTGCCATTGACCCCTGGGTAGGAGACCTTTGGGAGAAGATAATGACTATGTACCCTGTACCCCTCGACATTCCTGAGATCCCTCATGGAGTCCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010616:ENSRNOT00000014445:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0025820=Flavodoxin_1=FE(23.9=100)
A:
NA
C2:
PF0025820=Flavodoxin_1=PD(5.8=22.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTTGTGGCCAAGAAGCTCCA
R:
AGGAATGTCGAGGGGTACAGG
Band lengths:
175-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]