GgaINT0126430 @ galGal4
Intron Retention
Gene
ENSGALG00000008920 | NDOR1
Description
NADPH dependent diflavin oxidoreductase 1 [Source:HGNC Symbol;Acc:HGNC:29838]
Coordinates
chr17:953095-953728:+
Coord C1 exon
chr17:953095-953193
Coord A exon
chr17:953194-953626
Coord C2 exon
chr17:953627-953728
Length
433 bp
Sequences
Splice sites
5' ss Seq
GGGGTAAGA
5' ss Score
7.83
3' ss Seq
CCTCAGTGTCTCACTTGCAGGCC
3' ss Score
9.03
Exon sequences
Seq C1 exon
GTTTAATTTTATTGCCAAGAAGCTGTACAAACGGGTGCTACAGCTTGGGGGCAACCCGCTGCTGCCAGTTGCATTGGGAGATGACCAGCACGACTTGGG
Seq A exon
GTAAGAGCCTCATGGAGGGGTGATGGGGTGGGGGGCTGTGTTGCACTACTGCTCTCACACTCCAGACATGGCTAGTGGCCTCCTGCTCTGTGTGAGCATGCTGGTCTCTGCTCAGGTCTCTCCTGTGCCGAGGCTGGGGTCACTTGTTTCACTGGGGTAACCCGTGACCCCCAGCGTATGTCTAGGTCTTGTAGAACTGCAAGGGGTGAGTGCCTGTGCTGCAAAAGAGCATCAGAGATTGTGTCCCAGGACAGGTCCAGCATTGTCCAAGAAATGTCAGACCCACCAAGGGGGACAGAGCCACAATTGTCTGTGGCACTGCAGCTTCCCTGAGCTCTGACAGTAGTGCGGATGGCAGGGGTAGCACTGCTGGGTCTTGGAAGGATGATGAGAGAGGCACAACTCTGCTGCAACCTCAGTGTCTCACTTGCAG
Seq C2 exon
GCCAGATGCAGTGGTTGATCCGTGGCTCCTAGCCTTATGGGACAAGATCCTTGCCCTGTATCCTCTCCCTCCTGGCCTCGAGGTCATCAGTCCTGATGTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008920:ENSGALT00000014501:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0025820=Flavodoxin_1=FE(23.9=100)
A:
NA
C2:
PF0025820=Flavodoxin_1=PD(5.8=22.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTTTATTGCCAAGAAGCTGTACA
R:
TCAGGACTGATGACCTCGAGG
Band lengths:
190-623
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]