BtaINT0100728 @ bosTau6
Intron Retention
Gene
ENSBTAG00000013339 | NEBL
Description
nebulette [Source:HGNC Symbol;Acc:HGNC:16932]
Coordinates
chr13:22414019-22415428:-
Coord C1 exon
chr13:22415336-22415428
Coord A exon
chr13:22414124-22415335
Coord C2 exon
chr13:22414019-22414123
Length
1212 bp
Sequences
Splice sites
5' ss Seq
TCGGCAAGT
5' ss Score
4.02
3' ss Seq
CTCTGTTATTTACTTTGCAGGTA
3' ss Score
10.54
Exon sequences
Seq C1 exon
GTTTATTATAAATCTCAGATGGGAAGAGCTACAGCTTTAAGTGTAACTCCTGAAATGGAAAGAGTAAAGAAGAATCAAGAAAATATTAGTTCG
Seq A exon
GCAAGTTGTTTTATTCACTTGGTGCTATCATGAAGGACATGTTCTTTATTATTTATTTGCAGACCAAGAAGCTTTTGTAAGATACGCAGAAAGTACATGTGTTATTTCAGATGACATCTGAAAGCTGCCACTGTCTAACTTTACATTGTCCTGAACCCTACTGATGTTTCCAGATGTGACCAACACTTATATTTAAAGTTTCATTTTAAACTGAATTATGTTCATTTAAACAATGAGTCATGTTATTTTAGCCAGTGTCTTTGAAAGTGGTAGTCTTTGATGTATAAGTTAAACAATTATCATTTTACAGATGTATTCCATTGAATGTTGACTGTTAAGTCCTCTCTGCAAAACAAAATAAGAAATGAATCATTACTCCAAAGTAAGGACTTAGAGGAAAAAACAGTCTTTAAATATATTTAACACAGAAATCGGTTACTCATTGAAGTTCTGTGTTGCATGTCAGGGTCTTATTTGGGGAGTACACCTTCTCTCAGGAAATACCAGGGCTTCTGTTCTGAGTGCACATATCCCTTTATGTCTGCAATAATCCGTATCCTGATCTTACACAGAATCAGCCTCACAAAAAGCAATGTTCTGATAGTCAGATGTCAGAGAGAGCTTTATGCCTGGGAATCAGCATTTAGATTTTAAACTGTGCAGCTCTCTAGTGGCATTTCTGCCCAGAGATGCTGACTGTATTCAACACAAATTACCTTTAAGCTGTGGCTGTTTAGAGGGAACCAAAGGTGGATACCTAATGATTCTTACCATCTGCTCTGGTCAAATAAAAGGAAATATTGATAGAGGTATGTGTGTTATGCATGCTTCCACAGCATTATGGCAGAAAAAGGGGAAATAGAGAAACAGAAAAAGAAATTTAGGTTCCATTTAGTTTTGGATTTTTCCTATTGATAAAGTATTTCCCACTTTTACAGATTCATGGTTAGTGGATGTTGGTCACTTACACATTTGTATTCAGTTTGTAGAGAGATTTCGGTCATCTTTGCTGTAGCCTTTAAAGGAGACCATCAAGAGTAAAATTTTAGCTCATTATTCTAGAAGGAAATGCAATTCACTAAATAAGTTACCTGGGAAGTAATTCAGAATATGTTGTATATGCCTCACTCATTTGGAAAGCTTGAAAAACTTAGGTAATTTTTAAATTATAGTTGTCTTTTTGTGAAGTATGCTCTGTTATTTACTTTGCAG
Seq C2 exon
GTAAAATATACCCAGGACCAGAAACAGATGAAAGGTAGACCAAGTCTGATTTTAGATACACCTGGTCTCAGACATGTCAAAGAAGCTCAAAATCGTATTTCAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013339:ENSBTAT00000061339:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.871 A=NA C2=0.743
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(33.3=29.0),PF0088013=Nebulin=PU(55.2=51.6)
A:
NA
C2:
PF0088013=Nebulin=PD(37.9=31.4),PF0088013=Nebulin=PU(55.2=45.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAAATCTCAGATGGGAAGAGCTACA
R:
CATTGAAATACGATTTTGAGCTTCTT
Band lengths:
190-1402
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development