RnoINT0099861 @ rn6
Intron Retention
Gene
ENSRNOG00000006783 | Neb
Description
nebulin [Source:RGD Symbol;Acc:1311134]
Coordinates
chr3:37665886-37666905:-
Coord C1 exon
chr3:37666813-37666905
Coord A exon
chr3:37665994-37666812
Coord C2 exon
chr3:37665886-37665993
Length
819 bp
Sequences
Splice sites
5' ss Seq
TCGGTATTT
5' ss Score
4.52
3' ss Seq
TGCATGTCTCTCCTCCATAGGTT
3' ss Score
11.86
Exon sequences
Seq C1 exon
GTATTGTACAAAGAGAACATGAGAAAAGCAACACCAACACCTGTCACTCCAGACATGGAGAGAGCCAAACGCAACCAAGAAAATATTAGCTCG
Seq A exon
GTATTTCCCAATTAAATAGAACAGTCGAAGACCTTGGAATTAACATTTTAACATCATGAAAACATGCCTTTCTCACTCAACTGAAAAACACACTAAAATTTAAAAACACTGGATAACGTAACATCTTGGAAGACTTTTTTTTAACATCATAAAAATGTGCACTTCTTTCACTGAAAATGTACACTAAAATTAACACAGCTCTGCTTTTTCCATTTCAAATTGTACTAAACATATAATAATCAGCTATAGTCTTATTTCTCTTACATTTGACTCTAAGGGAGTTTTTCATAACCAGCTATAACAAATTGACCCCTAACATCTTCCACCTTCTGTTGTTATTTCTAAGGTACTTTATGAAAAGGGTAATACTCTGAAATTTGTCTTCACTTTGATATTCTTGTGTCTGGGAGACTCTGATTTTTGATTCTGGCACATTGGTTTATGTAATCTGGGCATTATCTAAGAAAAATGGTCAGTATCAGATCTAGTGTGAAGATAACATCAAGCATTCTGGTGCTGTATCGCAATTCCTAGTAAATCCAGGAGGGCACTTTCTTCCTCCTTCAGACTTACACCGTGCCCTTTGTCTTTGACAATGAAGCATTTTCATTTGCAAAGTCAAAACAAGTCTTGTGTCTTCTGATGCAAGTCTAGCCAGTTCCTTGAGCTGATCTGGAACACTTGGTCCAAATATCTGGCTACTATCTTTTGACTTAAATTAACCTCACCAGCTTCTTTCATTTGAATCTGTTAAAGTCTTTGAGCTTAAGAATTAGAACAAGGCTATGCCATGCACTCATGCATGTCTCTCCTCCATAG
Seq C2 exon
GTTCTTTACTCCGATAGCTTCCGGAAACAAATACAAGGTAAAGCTGCCTATGTGCTAGATACACCAGAGATGAGGCGGGTTAGGGAAACCCAACGGCACATCTCAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006783:ENSRNOT00000059461:108
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.583
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(37.9=35.5),PF0088013=Nebulin=PU(55.2=51.6)
A:
NA
C2:
PF0088013=Nebulin=PD(37.9=30.6),PF0088013=Nebulin=PU(55.2=44.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGTACAAAGAGAACATGAGAAAAGC
R:
TGTTGAGATGTGCCGTTGGG
Band lengths:
198-1017
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]