GgaINT0049825 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F6U7Z0]
Coordinates
chr7:34677854-34678324:-
Coord C1 exon
chr7:34678232-34678324
Coord A exon
chr7:34677962-34678231
Coord C2 exon
chr7:34677854-34677961
Length
270 bp
Sequences
Splice sites
5' ss Seq
TCGGTAAGC
5' ss Score
9.86
3' ss Seq
CTTCCTTTTTCTTTTTGCAGGTC
3' ss Score
13.33
Exon sequences
Seq C1 exon
GTGTTGTACAAAGAACACCTTGCAAAAGGAACCCCAACACCGATGACCCCCGAGATGGAGAGAGCAAAGCGCAACCAGGAAAACATCAGCTCG
Seq A exon
GTAAGCACAGCATTCAGTATTTGAAAGACTTCCTCCCTCCCTTCCTTCCTTTTTCTTTCTTTCCTTCCTTCCTTTCTCTGTATTCTTCCACCCTTCGCCCAGGGATGGAGGGAAACAGAAACACAGGGAGGGGGAGGGAGGAAGGTCTCCATCTCCCTCCCTCCATCTCACCCCTTCCTTTCTCCCTCCCCCCCCTTCTATTCCTTTCTTTTTCTCTATTCTCCTCTCCTCACGTTTAACCTTGTACTCACTTCCTTTTTCTTTTTGCAG
Seq C2 exon
GTCCTTTACTCAGACAGCTTCCGAAAACAGGTACAAGGTAAAGCTGCATATGTTCTGGATACACCTGAAATGCGGCGTGTGCGGGAGACACAGAAACACATCTCTACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012495:ENSGALT00000020417:61
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.751 A=NA C2=0.528
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(35.7=32.3),PF0088013=Nebulin=PU(55.2=51.6)
A:
NA
C2:
PF0088013=Nebulin=PD(37.9=30.6),PF0088013=Nebulin=PU(55.2=44.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTGTACAAAGAACACCTTGCA
R:
GAGATGTGTTTCTGTGTCTCCCG
Band lengths:
196-466
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]