BtaINT0100731 @ bosTau6
Intron Retention
Gene
ENSBTAG00000013339 | NEBL
Description
nebulette [Source:HGNC Symbol;Acc:HGNC:16932]
Coordinates
chr13:22410038-22411510:-
Coord C1 exon
chr13:22411412-22411510
Coord A exon
chr13:22410188-22411411
Coord C2 exon
chr13:22410038-22410187
Length
1224 bp
Sequences
Splice sites
5' ss Seq
CTGGTACTG
5' ss Score
4.41
3' ss Seq
ATATTTTCCTTCCAATATAGAAA
3' ss Score
7.52
Exon sequences
Seq C1 exon
TAAAAGACCTCAAAGTTTGGCGCACAGATCCTGGCTCCATCTTCGACATTGATCCCCTGGAAGACAATATTCAGTCTAGGAGTCTACATATGCTTTCTG
Seq A exon
GTACTGCTTACGTTTTGAGTTCCTCCCCATTTACATGGCTTTTGTCCTCAAAGTGAAGCTGCTGTGAGCTCTGCAGGTTCATTGTGCCTTCTGTGTAATGTAAATTTTCAAGTTTGGGCTTCGAAAAACCAAGAGAGTTGCTGTGTTATTTAATATGCCACTAATCATTTATGAAAACAAAACTTACAAAAGAGCTTTTTAATATATCCTAGATTAGTTCTAGGTTTATTTTAAAGGTGTCTAGAGCTTACTTACACTTCCTTTTTATTAGTGAATATGATTTTAGAAGTTCTCTGGGCTTTGAAATGCAGCTATTTGGACTGCACTAAACTGCTAACATAAAGATTTGTTTTATGAAAAGCACAACATTTTAAAGATATAGTTCTTTAAGGAATTCTTTGAAGACTTTTATATAAAACAGAGGAGAGACTTTCTACATAGCATCGTGAACGTCTTAAAATAGGTTTTCAAGTATCCTTAAAATTTATCTCTGAGTTTTTATAAAATGCAAAATTTGTAGTTTACATAGGAAGTTTATTTGACTTTTAACTTCAACTGTATGTTTATAATTAAAAGTAAAACCCAAATGGTTTGGATTTTTGGGTATAGCAATAGCAAGGGTTGATCTTTGTAGGCTTTCAGACCGCATTTAGCAAACTGAAGATTTGACAGTCATGGGACTTTTTAAAACATATAAATAGATCTATCATTTAGGTCCTTCTCTGCCCCCAATTGTGACTCCAAGTTTAATTGTTAACATTAACAAAATTGAAAGTCCAAGGCAAAGTAGAAATTCTAATATTTTTATAGTAATTTGATCCACATAATCAGCCAAATTGTCACCCAAATTTTCTAAAAATAAAGAAAAGGCAACAAATGCTGTATCATTAGTGATATTTGAAAAGAACTATTTATAACTAAACTTTTGATAGAAATTTACTAATTTGCCAGTGTTTTCTTAGTTCTTGTCAACTTCTCATGCCTCATCTCTCCTTTAAAATTTAGACCAAACTGAGTGTGAATGATCATTAAGTCATTTGTGTTGTTGATAATATGTGCTGAAGTTAGGGAATAGATGGCTAGAATTTATAATACCTGAGCTTTGGGGTTGCAATTTAATGAGGGATTATTTTTCTTTCTTGTTAAATTTTTAAGTAATTATTTTGGTTTGTTTGTTCTTCAAGTCACTTAATCACAAATATGAATATTTTCCTTCCAATATAG
Seq C2 exon
AAAAGGCGAATCTTTATAGGAGACAACGGTCTCGGTCTTACTCGAGCAGTACTTTTGGTACAGGTCTGGGAGATGACAAATCAGAAATATCTGAGATTTACCGTAGCTTTTCATGCTGCAGTGAGGTAACAAGACCATCTGATGAAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013339:ENSBTAT00000061339:25
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.029 A=NA C2=0.196
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGACCTCAAAGTTTGGCGCA
R:
CTCCTTCATCAGATGGTCTTGT
Band lengths:
246-1470
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development