BtaINT0102036 @ bosTau6
Intron Retention
Gene
ENSBTAG00000002795 | NKTR
Description
natural killer cell triggering receptor [Source:HGNC Symbol;Acc:HGNC:7833]
Coordinates
chr22:15392737-15393349:+
Coord C1 exon
chr22:15392737-15392766
Coord A exon
chr22:15392767-15393203
Coord C2 exon
chr22:15393204-15393349
Length
437 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
3' ss Seq
TTGAATTTGTATTGTGACAGGGT
3' ss Score
5.86
Exon sequences
Seq C1 exon
TACCACAAAACCTGCTCCACACCTGGATGG
Seq A exon
GTAAGAGTTACATTCTTAATATTTTGGGGAGGTGTGCTGGTGGCCAGTCCAACCAATTAGACCGTAGTGAACCCTCAAGGGGGCACTCTTGACCTCTGGTTTATTCTCTCATAGCCAAGCTCTCCCCTAAGGATCACAGGATGCAGTAGTCTTGAGACCACGGATGGTGTCTCAGTATCAAGTGCAATCTGATTGGTACACTCTCTACTGTAAAATAGTTAAGAATCATTGTTTTAAAAGCAGAAAACTAAGGCCCAGTTTGAGCAAGGTTTTTTTTTTCCTTTTATGAAGCAGAACTTCTAATTTCCTTCTAGTTGCTTCATACATCAGACACTTTTATTTTCAGGTCTGTGGACATGTCATTTACAATTGTCTTGATTACTAATCTTGGCTTAACTATCATCAAACCAGTTTTTCTTGAATTTGTATTGTGACAG
Seq C2 exon
GGTGCATGTTGTCTTTGGACTAGTTATTTCTGGTTTTGAAGTGATCGAACAAATTGAAAATCTGAAAACTGATGCTGCAAGTAGACCGTATGCAGATGTACGAGTTATTGACTGCGGGGTGCTTGCCACAAAGTCAGCAAAAGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002795:ENSBTAT00000030863:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.048
Domain overlap (PFAM):
C1:
PF0016016=Pro_isomerase=PD(4.5=60.0)
A:
NA
C2:
PF0016016=Pro_isomerase=PD(24.1=80.0),PF105004=SR-25=PU(21.1=56.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]