MmuINT0108812 @ mm10
Intron Retention
Gene
ENSMUSG00000032525 | Nktr
Description
natural killer tumor recognition sequence [Source:MGI Symbol;Acc:MGI:97346]
Coordinates
chr9:121741122-121741743:+
Coord C1 exon
chr9:121741122-121741151
Coord A exon
chr9:121741152-121741597
Coord C2 exon
chr9:121741598-121741743
Length
446 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGC
5' ss Score
8.84
3' ss Seq
TTGGATTTATATTATGACAGGGT
3' ss Score
3.35
Exon sequences
Seq C1 exon
AACTACAAAGCCTGCTCCACACCTGGATGG
Seq A exon
GTAAGCATCGGTTTGTTAAAATCTCAGAGAATTGTTTGATGAGCCCGAAAGACTTGCTGGCCTGGGTTAGTCTTTTGTAGCCAAGCTCTTCCCAAAGGGGCACAGGGTATAGGAGTTTGAGAGCCTGACTCATTTTTGCCCATGAGTTTTGCATATACTTGTTGAGATGAATTCTCAGTATGAAGTGTCCTCTCTTAGCAGATTCTTAACCCTAAAATGGCCAGCAGCTGTTGACAGCAGAGACTGCGTCCCACCTTGTCTTGAGATGAGCTGTCACTACTTCCTGTTAGGAAGTAGATTTCAAGTTGTCATTCCCTTATAATTGGTTCATAACACTTTGGTTTGTTTGTAGTTGTGTGGATAGTTTTTGATACCCGTTGTCCCAATTATGTTCATACTGTAATTATTACCAGACTAATTCATTCCTTGGATTTATATTATGACAG
Seq C2 exon
GGTTCATGTTGTTTTTGGACTGGTAATATCTGGTTTTGAAGTAATTGAACAGATTGAAAATCTGAAAACAGATGCTGCAAGCAGACCTTATGCAGATGTCCGAGTTATTGACTGTGGGGTGCTGGCCACAAAGTTGACAAAAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032525:ENSMUST00000035112:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.009 A=NA C2=0.027
Domain overlap (PFAM):
C1:
PF0016016=Pro_isomerase=FE(17.9=100)
A:
PF0016016=Pro_isomerase=FE(17.9=100)
C2:
PF0016016=Pro_isomerase=PD(24.1=80.0),PF105004=SR-25=PU(20.1=54.0)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types