DreINT0104761 @ danRer10
Intron Retention
Gene
ENSDARG00000059097 | nktr
Description
natural killer cell triggering receptor [Source:ZFIN;Acc:ZDB-GENE-030131-1725]
Coordinates
chr24:20505229-20505543:-
Coord C1 exon
chr24:20505514-20505543
Coord A exon
chr24:20505375-20505513
Coord C2 exon
chr24:20505229-20505374
Length
139 bp
Sequences
Splice sites
5' ss Seq
TGGGTAGGT
5' ss Score
6.86
3' ss Seq
GAACTGTTGGTCTATTTTAGAGT
3' ss Score
8.49
Exon sequences
Seq C1 exon
AACTACAAAGACAGCGCCTCACCTAGATGG
Seq A exon
GTAGGTTCATAGTAATCCAGTGGCTCATTTTAACTAGTTTTATCACGTGTAGTTTAGAGCAACATATTCATGTAAAATGTAGAATTTAGAAATGTATTACACATTTCTTGTAACTGTAAGAACTGTTGGTCTATTTTAG
Seq C2 exon
AGTGCATGTGGTCTTCGGGCTGGTCATCTCTGGCTTTGAGGTCATAAAGAACATTGAGGGGCTGAAGACTGACTCAGCCAGCAGACCGTATGCTGATGTCAGAGTGATTGACTGTGGACAGCTGATTACAAAGTCTGCAAACGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000059097:ENSDART00000127923:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0016016=Pro_isomerase=PD(1.6=22.2)
A:
NA
C2:
PF0016016=Pro_isomerase=PD(24.1=80.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAAGACAGCGCCTCACCTAG
R:
CGTCGTTTGCAGACTTTGTAA
Band lengths:
171-310
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]