BtaINT0102853 @ bosTau6
Intron Retention
Gene
ENSBTAG00000022799 | NOTCH1
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MSM3]
Coordinates
chr11:103992326-103993431:-
Coord C1 exon
chr11:103993283-103993431
Coord A exon
chr11:103992543-103993282
Coord C2 exon
chr11:103992326-103992542
Length
740 bp
Sequences
Splice sites
5' ss Seq
AGAGTGAGT
5' ss Score
7.36
3' ss Seq
CGCGGCCGCTGTGCCCGCAGGTG
3' ss Score
11.23
Exon sequences
Seq C1 exon
GTCCATCGTCTACCTGGAGATCGACAACCGGCAGTGCGTCCAGTCATCCTCCCAGTGCTTCCAGAGCGCCACGGACGTGGCCGCCTTCTTGGGCGCGCTGGCCTCGCTGGGCAGCCTTAACATCCCCTACAAGATCGAGGCTGTGCAGA
Seq A exon
GTGAGTGGCCAGCCCTGCTCCCCCAGCTGCACTCCCACGGGAGCTCTGGACTGTCCTGGGAGGGGTTGTGCATGGGAGACGGTCTCCCAGCTGCACCCCCACCCCGGGATGCTCTTGTTCTTTGCGCCAGTTGCCACCCACGGGGGCGTGTGTCACGCCATCCAGAGTTCGGGGAGCGCTTTTCTGGGGTTTCCCACCGGGCACGCTCTCTCTCCCGTAGCAACAGCTGTCAGCGAGGCTGGCCCAAGGGAGTCCACACATCCACCAGCAAATGTTGGAGGGGAGACTTTTCTCGCCCCACCCCTTCCTCCCGATTTTTCTTTGTTGGGTATTATTTCAAAATCATTACAGTTTTTTTTTTTTTTTTAAAGAGAGAGAAAGCAAAGAATTGATCGATGTCATGTGAAGTGTTGAAGTTTGTATCTGGAAAATCCCCCTAAATCCTTTGTCTTAACAGCTCGATGCGAGTGCAGCGATTTGAAGTTGCCTAATCCTTCTCCCTTAAAGGAGAAAAAAGTAAAAGCTGTCTCCAGATAGCCGGCTGGTGCAGGAGAGAATTTAGCGATAGTTTGCAATTCTGATTAATCGCGTAGAAAATGACCTTATTTTGGGGGGCGGGATGGAGGCGAGCGGGCGAGGACGCGCCGGGCCGCGGAGCCAGCGCGCTGCCCCCGGCCGACGGCCTGCCTGGCTGCGCGGCCTGATGTCCGGGCGCCCGCCCGCGGCCGCTGTGCCCGCAG
Seq C2 exon
GTGAGACGGTGGAGCCGCCCCCGCCGCCGCCGCTGCACTTCATGTATGTGGCTGTGGTGGCCTTCGTGTTGCTGTTCTTCGTGGGCTGCGGGGTGCTGCTGTCGCGGAAGCGCCGGCGGCAGCATGGCCAGCTCTGGTTCCCTGAGGGCTTCAAGGTGTCGGAGGCCAGCAAGAAGAAGCGGCGCGAGCCCCTCGGCGAGGACTCCGTGGGCCTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000022799:ENSBTAT00000017746:28
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.039 A=NA C2=0.288
Domain overlap (PFAM):
C1:
PF076847=NODP=PU(83.3=98.0)
A:
NA
C2:
PF076847=NODP=PD(15.0=12.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACCTGGAGATCGACAACCGG
R:
TTGAGGCCCACGGAGTCC
Band lengths:
356-1096
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development