BtaINT0102857 @ bosTau6
Intron Retention
Gene
ENSBTAG00000022799 | NOTCH1
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MSM3]
Coordinates
chr11:103990964-103991978:-
Coord C1 exon
chr11:103991813-103991978
Coord A exon
chr11:103991260-103991812
Coord C2 exon
chr11:103990964-103991259
Length
553 bp
Sequences
Splice sites
5' ss Seq
CGGGTAGGT
5' ss Score
8.53
3' ss Seq
CCTGTCCTGCCCGGCTGCAGACG
3' ss Score
7.65
Exon sequences
Seq C1 exon
TTCGAGGAGCCCGTGGTCCTCCCTGACCTGGACGACCAGACGGACCACCGGCAGTGGACCCAGCAGCACCTGGACGCCGCCGACCTGCGCGTGTCTGCCATGGCCCCCACGCCTCCCCAGGGCGAGGCGGATGCCGACTGCATGGACGTGAACGTCCGCGGGCCGG
Seq A exon
GTAGGTGGCTGGCCAGACACGCCGCCCCCCACCCGGGGCTCCACCCCCAGGCACCTGGTGGCATTGGGCAGCCCGCGCTTCCCTGACCTGGTGACCCGCCCACCCCCCTGTCCCAAGCCTCAGGGTCGGTACCTGAAAACTCCCCAGGCCTTGGAGGGGGTGAGGACCCCCAGGAGTTGGTCAGCCTCCTTGCTGCCTCCCCTCTAGGAGTACAGGTCTCAAAGTGTGCTTTGCCCTCAGAGTTGATTTCTTCTTTCAAAATGCATCTTTTGAGACACCCAGAGTGCCTGTTAGCTTGCCTCCTCTGTCTCCTGGACGGGGCTGTGGGTGAAGGTCTCGGGCAGGTCAGGACGTGGAGCCCACCAGCTACCTGGCAGCTGGACTTGGTTCTGCCCTCGGGGAGCTTAGACGGATTGCACTGGTGCTGGGCAGTGTGGCCGTGTGCACTGGGCCTCCGTGGGCTGCGCCCCCGCTGAGGTCTGTTACCCCCGGGAGCAGCTGCCAGGGGCCAGCCTTCCTGACCTGGCCCCGTCCCTGTCCTGCCCGGCTGCAG
Seq C2 exon
ACGGCTTCACGCCCCTCATGATCGCCTCCTGCAGCGGAGGGGGCCTAGAGACTGGCAACAGCGAGGAGGAGGAGGACGCGCCCGCGGTCATCTCGGACTTCATCTACCAGGGCGCCAGCCTGCACAACCAGACGGACCGCACCGGCGAGACCGCCCTGCACCTGGCCGCCCGCTACTCGCGCTCCGACGCGGCCAAGCGCCTGCTGGAGGCCAGCGCGGACGCCAACATACAGGACAACATGGGGCGCACCCCGCTGCACGCGGCCGTGTCTGCCGACGCACAGGGCGTTTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000022799:ENSBTAT00000017746:31
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.786 A=NA C2=0.434
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF127962=Ank_2=PU(84.7=83.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTGGACCCAGCAGCAC
R:
TTGTCCTGTATGTTGGCGTCC
Band lengths:
353-906
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development