BtaINT0103032 @ bosTau6
Intron Retention
Gene
ENSBTAG00000012121 | NOXA1
Description
Bos taurus NADPH oxidase activator 1 (NOXA1), mRNA. [Source:RefSeq mRNA;Acc:NM_001102075]
Coordinates
chr11:105707074-105708345:-
Coord C1 exon
chr11:105708237-105708345
Coord A exon
chr11:105707209-105708236
Coord C2 exon
chr11:105707074-105707208
Length
1028 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
3' ss Seq
CCGCCTCCCCACCCCCTCAGGTG
3' ss Score
9.91
Exon sequences
Seq C1 exon
GTTCATGGAGGCCCTGTCCGACTTTCAGCGCACCCTGGCCCAGCTGAGGGACAACACCGCCATCGACTACACCCAGCTGGGCCTGCGGTTCAAGCTGCAAGCCTGGGAG
Seq A exon
GTGAGCGTGCGGGGAGCGGGCCACCAGGAGGCCGTGTGGCTGGGCCCTGGGGGCTGCCTGTGGGTGGGCAGCCTGGGGGAGGTCCTTCCAGGGCTGCAGGCCCCGCCCTCTGGGCCCTGTTGTCTTGTCACCGAGGCAGGTGGGCCCGAGTTAAGTGAGGTGCTCCCTCTGGCCAGAGGGGCCCCAAAATCCCAGCAGGAGAGGGCAGTGTCAGAAGTCAGTGAGAGGTGGCAGGGTGGGCAGGGCAGGAGCTGGCCTGGCAGTGGGCCCTGGCGTTCCTGCCCTGGGCTTGGTGCTTGGCTCAGTTCCTGGCCTCCTGGGAAGTGGCTGGCACTGACAGAAAGGCTTGGGAGGTGCTCCCACCGCTCCCAGAAACACGCCGCCTTGCAGCCTCTGGGAGCCACAGTGTCCAGTAGGTCAGCCGTGGGGGAGTCCCAGCAGGGTGGGCCAGGCCCCAGCCCTGGCTTGCAGGGCGGGGTTTGGGCTTGGCGTCTGTGGCCCGGGCAACCCCGTGGCAGCGGCTCTAGGAGCGCACAGTCCCTGCAGAGCGTGGGGGCAGAGGCTGCCCCGGGCAGTGCTCCGTCCTCCCGGCAGCACTGGACGACTTGACTGCTATTGCCCAGCGTGGGAGGGGAGGGCCGGACAAGAGGTGCCCCTCAGATAGCGCCCCAGACTCTTGCGGTTTCAGGGAACAGGGCAGCACAGGCAGGAAGGGGTCAGGCTAAACGCAGGACAGGCGTGAAGGCTGAGCAGATGCTTCCAGAGATGGGACATGGCCTGACGTTCAGAGCAGAAGAAAAGAAGGGAGGGCTGGTCGGCTCTGGCTGGGGGGGTCCAGAGAGAAACCAGGCAGGCAGAGCCCACCCCAGGGCGGGAGCCAGGGGGCACCTGGAAGAGCCCTGGGCCACTGTGTCTGGGCAGCTCAGGGGCTGGACCAGTGCAGGGTTGGGTGGGGCCAGGTGGTGGCCCTGTGGGGGAGGGGAGTGCTGGGCCTGTCGTCACCCCGCCCCGCCTCCCCACCCCCTCAG
Seq C2 exon
GTGCTGTTCAACATGGCTGCGGTGCAGAGCCAGCTGGGGCTCTGGGCAGAGGCTGCCTGCAGCCTGGGGGACGCCATCTCCAAGGGGCCGGAAGGGGCCCGCAACGGCCTGGACGTCGCCCTGGGCCAAGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012121:ENSBTAT00000066207:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.067
Domain overlap (PFAM):
C1:
PF134141=TPR_11=PD(28.8=45.9)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCATGGAGGCCCTGTCCG
R:
CTTCCGGCCCCTTGGAGAT
Band lengths:
202-1230
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development