GgaINT0125103 @ galGal3
Intron Retention
Gene
ENSGALG00000008952 | NOXA1
Description
NA
Coordinates
chr17:1297072-1299364:+
Coord C1 exon
chr17:1297072-1297180
Coord A exon
chr17:1297181-1299229
Coord C2 exon
chr17:1299230-1299364
Length
2049 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
3' ss Seq
TCCCTCCTTGCTGGCCTCAGGTG
3' ss Score
8.98
Exon sequences
Seq C1 exon
GTATGAAGAAGCTCTCTCTGACTATCATATGGCCTTCAGTCATCTAAGAAAAAATCCCTTCATCGATTACAAGCAGCTGGGGCTGAGGCACATTCTCTATGCATGGGAG
Seq A exon
GTAAGGGTTAATCTGGCTCGGTTGTCCTACCCCTCTGTTGGGACACTCATCAGGTTTTCAGCAGCAGGCATAAGTAACCCAAGAGCTTTTCAAGACCCTACATTAGGACAGTAGAAAAATTGCTTTCACTTTTAAGATTAAGTTCCTTTAGAAACACTCATAAAACAATATCATCTCTGAAGAGTTTTAACAAATTACTTTGAGATGTGAAATTGGTTGGAGCGGTTCCCCATGAATTTCTTTTCTTTAAGCTTGCTCATAGTAATACATACACAAGTTTTATCAACTCTTCAGCTTTAAAAGTTGAAATAGATTGAAGAGAAATAGATAGGAACAAAATTTGTACAGAATAAAGATTTTCTTAAAACTTTTTGAAATTAACCTCCTACGTGCCATTAAAGAAAGTCTGAGTCAGAACTGGCTATAAATAACTTTAATATTTAGGTTGTAAAGGACTCATAGAAGCTGTGCATGCATTACTGGGAGGGTTCATTTTGCATTCCCAAATCCATGTACACAGACAAAGCAGATACAGGAAAAAATATTTAATCCCTTACTTCCGTGAGAGCGAGGAGTCATTGTGCAACTCAAATCAAGCGTGCCTAGGAACTTCTCATTCAGCCTTCTGTAATTTACATCACACTGTACCTGGCAGGAAGAAGTTAGCCTGTGGATTCACAGCGGTATCTGTGATACTTCCCAAACCTTATTGTTTTTAACAGTTTTAGTGCCAAGTACTGCTTTATTTGAGCTCAAACACACTCGGAAACAAAGGCTTCCTTTATGATGCACAGAGCTACAGGAGTGCCCAATTCCATCTGGAGGAAGATGGCACTCATTGCGTGATGAATATCCAGTCCCTCACTCCATGTGCTCTAGGCCAGGCTGTGTGCTCTCACTATTCTGACACTGGATTCAGGATCTGCATCCTGATTCATTTCTGTCTCACTCTTACAGCTACCTGCAGCTTGTTTTTCAAATTACACAAACAGAGCTCCTACAGAGCTGTACCATCATCTTTCCCCATGCATGGCCTCTCATGGGCTGCATGATCCCCTCAAGAGAGAGGAGATTTCAGTGTACAGTTTGGAAGTCCAGACATTTTTTGCCTCTGGTGGAGCTAGTACTTCTGAGCTGAGTTGGAGCTGCTGTCTTGTCTTTCCAAGGGGGAGTATCTCTGCAGTTCCAATAGATGTGTTCAGCATGATCATTCCGCTTTAAAAGACCAATATTCTATTATGATAAAGGAGTAAAGGAAAAGCATCCTACTGCCTGCACCTCAGTTCCAAGCACTACTCATGTCCAAATATCAAAAAGCAATTTGCAAACTGATAACCATATCACATAAGATAGTAAGGTATCTGAATGAGTCTGTTAGACCACACTTCTGCCTTGTTGGACAGCAGCTTTTCCATACTCTGATGGCCAATGGAAAGTGGAAGAGAATTCTCTTCCTCTTACTTAAGCATATAGACTGAGGCTCCTGATGCCCAGTCCGTAGTACTCTCACACTGCCACTTCAAAGAATGTATTTACATGCTGGGTAGCAAGCTACAGCTGCCAACCTGCACCTTCAGAGCCCACTGCAAAGGGCAGTAATTTCAGTTAGGTTATTCCAAAGTGAAAGAGAATCAGAATAATTCTGCACAGCAAAAAATATTACTTAGTTTCACACAGAAAGAAACCCATACAGTTTGCCTTACTAGCCTTTTAGACAGAGGAAGAATAAGATGAAAACCTGTTTGGTAACAGAGTCTTCATCTGTTCTTCCCCATGCCTGCCCATTCTTTGAACAGAGCTGGCAGTGCCAGTTGAAAGCATGGCTTTGATCTCTTTCCACTCTGATTATGAAGTTTTATCAGCTGTGCTCCTCACAGTGCCTTTCCTGTGATCACTGGGGAGCAGGCTCTTGCTGCTGCCATTTTCGTGGTGGTTCAGTGCCAGGTCTCTCTTGCCTGGCTGAGTCCACTTAGTAGCACTGGGTGTCTGTTCAGCTGCCGCCCTCAGAGCAGCAGGAAGACAGCTCTGCTCCCTCCTTGCTGGCCTCAG
Seq C2 exon
GTGCTGTACAGCACTGCTGCCACGCAGTGCCGGCTGCAGCAGTGGCAGGAGGCCAGAGACACCCTAGAGAAGGCCGTCGTGTGGAGACCTGAAGGAAGATCAGCAACACTGGCCCTGGCCCTTGAGCGAGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008952:ENSGALT00000014558:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134141=TPR_11=PD(26.8=51.4)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]