MmuINT0109924 @ mm9
Intron Retention
Gene
ENSMUSG00000036805 | Noxa1
Description
NADPH oxidase activator 1 [Source:MGI Symbol;Acc:MGI:2449980]
Coordinates
chr2:24946012-24947349:-
Coord C1 exon
chr2:24947241-24947349
Coord A exon
chr2:24946147-24947240
Coord C2 exon
chr2:24946012-24946146
Length
1094 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
3' ss Seq
ATGTCCATCCTTGTTCCTAGGTC
3' ss Score
9.37
Exon sequences
Seq C1 exon
GTTCCAGGAGGCTGTGTCTGACTTCCAGTTGGCCCTGGCACAGCTGAGGGACAATGCTGTCATTGACTACACACAACTGGGTCTGAACTTCAAATTGCAAGCCTGGGAG
Seq A exon
GTAAGTGAGCATTGGCTTGTGCAGAGGTCCCATGCCAAGCAGTGTCACTGAGCTTAGAGGTGCTCTCTGTGGGTCTGGGGTTTATGAAAGGTCTAAGGCTCTGCCATGGCCCTGATTTGCAATAAGGGCCCTATAATGTAGTCTGAGGTCCTGACTGGAGTCCTAGGGTGAAGTCTGGAGTCTGCCAGGGCTTGTCACCTTTATGTTGGTGTTGCTGTCATGGTCAGCCATGCAGAATGAGGCGTTCTGTCCAGCCAAAGACTTTTGGATCCCTGAAATCCAGGGCTCCAAAAACAGATAAAAAAAGAATATACTTGAAGGTCATGACAAGGTGACAGACGGTTTAGGGGGAAAGGGTTTGGCTCAGCAGTACCTATAGCTGAGCCAGAGGAAACAGTTGGAACACAGCAGTAGGAAGAGAAGGTAGGTTTCTCTCCTTGTAGCAAAGCTAAGTCTGCTATGTGCTTACATCTCCAGGATGAAGGAAGAGTGGGGTCACAGCATTGTGTGAGTTTATCTGCCTGTCAGAGAGGGTTTAAGATAGCCTTACCTCAGTCCTCTTTGCCCACGAGAATGCTGTGTTCCATTGTATGTGGGGTCCTGATTGTCCCTGCATTGTCAATGGGAGCCCTTAAACATACTCTAGACTCAGAGGCATAGGGTCAGCTAAAGGTGGTGGCACGGTGTAGAAATTGGGAGGGTGTCAGATAAGGGGAGACTTTGTGAGCCACTGTGTGAGAGTTGGGAGTCTAACCCAAGACTTGGGAAGAGCAGCAAGTATTCTTAACCACTGAGCCATCCCTCCAACTGCCCCCTCATCCCCCATAAGGAAGACACTTTAAAAGGGAAATCTGCTTCAAACAGAAAAGTCCAAAGCAAAACATGGCCCCTCCAGGACTAAACAGATAAGGGGCATGACAACTGAGCCAGTCAGGCAGCAGGTGGTCTTGTCGAACCTTCAGCTACTGTAACTGGGGAACTCATATGAGGACTACCTGGGGGTCCTGGCCCCTGCAGTCATGTCCATCCTTGTTCCTAGGTCCTATACAACATGGCATCAGCACAGTGCCAGTCATGTCCATCCTTGTTCCTAG
Seq C2 exon
GTCCTATACAACATGGCATCAGCACAGTGCCAGGCAGGGCTCTGGACCAAGGCTGCCAATACTCTAGTGGAGGCAATCTCCAAATGGCCAGAGGGGGCTCAAGACATCCTGGACATTGCCATGGACAAAGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036805-Noxa1:NM_001163626:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134141=TPR_11=PD(22.9=43.2)
A:
NA
C2:
PF131761=TPR_7=WD(100=75.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAGGCTGTGTCTGACTTCC
R:
TGCACTTTGTCCATGGCAATG
Band lengths:
238-1332
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: