BtaINT0103622 @ bosTau6
Intron Retention
Gene
ENSBTAG00000009265 | NR5A2
Description
nuclear receptor subfamily 5, group A, member 2 [Source:HGNC Symbol;Acc:HGNC:7984]
Coordinates
chr16:80828592-80834970:+
Coord C1 exon
chr16:80828592-80828711
Coord A exon
chr16:80828712-80834822
Coord C2 exon
chr16:80834823-80834970
Length
6111 bp
Sequences
Splice sites
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
3' ss Seq
CGCCGCGTTCTGTGTTGCAGGTA
3' ss Score
11.47
Exon sequences
Seq C1 exon
GTAGATGACCAAATGAAGCTGCTTCAGAACTGCTGGAGTGAGCTCTTAATTCTCGACCACATTTACCGACAAGTGGTTCACGGAAAGGAGGGCTCCATCTTCCTGGTTACTGGGCAACAA
Seq A exon
GTGAGTGTAGACGCCAGAAGGAAAAAAGAAGTGTCTTTTTATTAAGCATGTGCAGGATGGCAGGAATTCAACTAGGTCAGAAGCTCTTTTGCGCTTTGAAAGGGATATATATTGGCTGCATATAATTTAGAGACGCTGACTTGGGGCGCCCTGTTCCCGCTCGGATGGTTACAGTGAAACTTGGCCCAGACTGCCACCCCTGCCGACCTGCTGGGGTTGCAAGTGGTGCTCTGAAGGGTCAAAACAATTGCTGAGTCGGGATTAATGGTTGGTACCTTGGGTTTCTTCCCCAAGCTTCTGCATGAATCTATCACACTTGTTTGTTAGCTATTAAAAAAAAAAAAAAAAAACTTGGAAATGATGAAATCTTGGTATTTTGGAATCATGTTGGTGGGAGAGACTGATTCAAATACTGTATGTCAATCATCTGTATCTTTGGCCTAAAGGCAGCCAAGTGAGAAGGAAAGGCAGTGTTCATTTTCAAGAGTCAGTCACTGTTTTTTTCTCCCCCCTTCCACCTTTATTTTTTTCTTTTTTTAATTGGAGTATAACTGCTTTACACTCCTCTGTTAGTTTCTTCTGTACAGGGAACTGAGTCAGCTGTGTGTACATATCCATCCCCTCCCTCGTAGGCACCCCCCCCCCCCTCCGTTCCCCTCCCCTCCCGGTCATCTCGGAGCACCGAGCTGAGCTCCCTGCACTCTGCAGCAGCTTCCCACTCGCGATCTGTTTTGCACAGGCCGGGGTGTGTATGTCAGTCCCACTTGCTCAGTTCGTCCCACTCCCCCCCAGCCAGTCATTATCGAAAAGGAAGATGGAAACAGGAAATTGCCGTGAGGTCCTACTCCTTTACGAATGGGTATTTGTTTGGTCCACGGGTATTTATTGAGCATCGTGCAGGGCCCCTCGCTCACTGTCCTGTGGCTTCGGCATATATTAGTGACCAAAACAGAAAAGTAGTCAAACGATAAAGGGGCTTAACGCTTCAGCAGGAGAAGCTGACGGTAATCAATAATCCTAATAAATGTGAGAAGTCAAAGTGCTATTGAATTTAAAAAAAAAGGGGCGTGGGGATGCCGTGTAGAGGGGAATCAGTGTCCTCCCCTGGCGTGTTGCTGTGTGACCCACGGCTTGCAGTGTTAACGGGACGGGTTGGCTGAGCCTTATTCAGAAGGTGAGATTTGAGCGAAGCCTTGAGGGAAGAAAGACACCTGGCCTTCTGGACACCTGGGAGGAGAGAAAGTCTGCCTAGTGAACCTGATTCCAGCTTTACCGCGTTCTGGAATGTCCCTCCTGGTTCTTGGCCTCCGTTTTCTGTTTTCTGTGGGTTGTTAAAATGATGGGAGGGATGCAGAGACCCGATTAGTCCGGGGGGCTGCTGCAGGCCTCAGGACCCAGGCACCGTGATCTTTTACTTCCAACCATAAATGTTTATGTGCTGTGAAAGCCCGGCAGTGCATATTTGAAAGTGAAAGGCTGTTTCCACATCATTTGCTGAATTATAGATAAATCACATGTTCCCAATCAAGTTAAAGGCAAGCACTGTCTCAGAGTTTTTGCAGATCGGATCAGCCATCATCACTGCCTGGCCCCTGCTTCCTGCACAGCTCCTGAGAAAAAGGCTTTCTAGGATCAAGCCTCAGCGGGTTTGACTTCCTGATCTTTTGAATTTCCGTTGAGTGTTTCCAGCCTGTGACCCGGGTCTGTGGAAGGAGTGGACCCATTTTCAGAGCCTCGTCACAGCCTGCCTCCCAACCCCCTCCCTCCCGGGCCCCACGGGGAGCTACATTAGAAGAACAAGACTCAGCCCACAAATTAATTTGATTTCGTCCTTCCGAGTTCCAGAAATCAAATGGGTTTGTGCCGTTCTTTCTCAGAGCACTTCCATTCCTGCTCTTAGAAATGCTCCTCATTTCACGTTTCATTTTGCACTAAGTGCTGACCCTGGTAAAGGCAATTACCATGTAAAAAGTAGAGAAAGTGCCCTCTTCCTCCGATTTTCCAAACCAAGAATGATCAAGGAGTGGATGGCGTTTCTCATGTTCAGTATCAATTATTGCTACTTCGTGTTTTCCATCACAACGGAATTTCTTACTTAACCCTGAAGTTAGCTATTTTAATTCTGTCTTTTCTTCTGGCTTCTCTAAGGGTACGTTAAATAGCCTTTTTAAGCCAAAAGGAAAAAAATGATTGTCAGTAACATTAAGCATCGCCAAATCAATTCTACATATCAGTATTTAGCATCTTATCACTATAAGAATTCATTTCTTATCAGGATTTTTAAACCACATGCACACAAAACGTATGGCTGAAAGTGCATATATAAAATAGCAACAGAGGATTTTGAAGTGGTTCCACTTTTAAGTGTTTGCACATTCTCGCTAATGAACAGCCGCTGTAACATTTTCCTATGGGAAGGGCCTGCTGGCACCTTTTTCATTATCTTCTGTTATTATGTATCGTATTAAAAAGACAGGCATCTTCCAGCATCCAAGTCATCAAAAATTGCAGCTGTCAGAACGGAAAGCAATTTAGCTAAACCTGTTGCTCCCTTCATGATGAGCGGAATTTATCCAAAGGGGACATCCACTTACAGTATTTCTTCAATATCTCCCTTGAATTTAATGGGCACAAAGATTCCAGGTAAGGCAGTAATAAATTAATTTTACTAAGTACATAAAAGACAAGGCCAGCTGCTCCTGCGGTGAGTGCAAACTCCACATTCGACAATGAAAATATAATTATGTTTGTAATAAAATGTAAAGAAGTTGCAGATCTGGGCGCTGTTTCAGGAATAAATCACTGCTCCTCCTTCAGAGCTGTGTGATTTGATAAATTATCCTTGAAGGAGAGGTTATCAGAGCCCCCACTTCATGAGCATGTTTGAGCTCTCACATTAGCCTGCATATAAATATATAGCGATAAAGTTGTCGGTATGCCAATTGATTTCCCGAAGTCCACCTCGCTAGTTTAGAGTCCCGTGAAACCATTTCAGTTCCTTTCTCTTAGAGTGTGTTTATGTTTCCAAGTATGAAATTCTGACAGTTGAACTTATTTCATACCTATTTGATCTACATACACCTCACAAGTTTTAACTTACCCATCTTTTTAAAAAATGAATTTAGAGTCCTTTCAGTTACAGTGTACTTCATTTGCAACTATGAAGTTTTAGTTTTGTAACTTTCAGTTCAGTTCAGTAGCTCAGTCGTGTCTGACTCTTGGCAACCCCATGAACTGCAGCACGCCAGGCCTCCCTGTCCATCACCAACTCCAAGTCCACCCAGACCCATGTCCATTGAGTCGGTGATACCATCCAACCATCTCATCCTCTGTCATCCCCTTCTCCTCATGCCCTCAATCTTTCCCAGCGTCAGGGTCTTTTCAAATGAGTCAGCTCATTGCATCAGGTGGTCAAAGTACTGGAGTTTCAGCTTCAAAATCAGTCCTACCAATGAACAGTCCTACCAATGATCTCCTTTGTAACTTACTGCCTACCTATTAGAACCACACACATAGCAGAATTGAATTAACCCCATCTTAATAATAAAAAAGAATCACATGCTCAGTCTCTCAGTCATGCCTGAGTCTTTACAACCCTGTGGACTGTAGCCCACCAGCCTCCTCTGTCCATGGATTTCCCAGACAAGAATACTAGAGTGGGTCGCCATTCCCTTCTCCAGTAGCAACATACTTGTGGCTGACTTTGGTACACTCTCCAGGTGTAGGGCTGACTAGTGATTTTTTTTTAACGTGTTATGTGCATTCTAAGCTGTAGTGATGATGCTTTCAGCTGGTGATTCCAAGTTTAACTTGGCAATGTTGTCCCAGCTGTTCTCATTTCTTAACGACGATGGGAGTGGGTGGCCCCTTACTGTTATCCAGCTGAATACCTCGCTGAGAGGAGGGCACGAAAGGACGGGGCCTTTCTGAGGCTTCCACAGGCCCCACCCACCCTCCTGCTCTGCCCCGGGTTTCCCCCACCTCTGACCCTGGCTGCCATTCCCTCTTCTACCCCACTTTGTCCCTGTAGGATTTACATTCTTCTTATTAGGAGTAGTTAGACCCTGTGCAGTCCCCAAGGGATTTGGAGCTGAGCTACCCCTGTTTAGTAAGAAGAACGTCCTTGGAGTAGGAAGTTCTCTTGGCGGGACCTGGTCCAGTGAAGGTTGGGGCATCCCTGGGCGTGCCCAGCGGGTGACCCTGCAGTGGTCATGGCATCCTTCTGCTGGGCCTCTCTGCCTCCAGCTCAGGCTTCAGGCTGCCTGTGTGCTGGCCCTTCCTTTTACACGGTCTGAGACAGAAGCACAGGAGCACTTAGCTGCTGATGTGTGAGTTTAGGGGGAGAGGCGGGCACCTGGCCCAGGCGAGGAGGACGGTGTGGTGGGATGCGGGGCCTCCCGAGGACACGCATGAACTGGGGCTTTTTCATGCGCAGTTGACTCTCTGTAAACTGATTGACACCTTTGTGGGGGTCGTCTTTCCACTGACTCATAATTTTTCTCACTCTCGAAAAAAGGTTTCTGTGCACCCAGTATTCTCTAGTTAGAGCTGAAAATTCAACTCATCATATTTACACACACACACACAAAATCCATTCTGCCTTGTTTTTAATTGCAAATTCTCCTCGAGGGACTCGTTCTCCTGCTTAGGAGGCAGCCCTGTGCCTTCTCCTAGAGAAGCAAGTGCAGTCAATTATGGTAATGAAATGTCAATAAATATAAAAATTTAATACAATCTGCTCCGGGTGAGTGGCAGATGAGGACTTGCCTCCCAGACAAATTTGCTGCTGCTGCAAATATTAAATGCACCTAAAAGAATATCTGGCTGCCTGAGCGCCCGCCAGTGAAGAAGAGGATGGGGCGGCAGGTACCAGCCGGGCTCTCCCGTTATGCTGTAATTGCAGCAGCACAGCCGGTTCTGCCATTGACGGCCACCCCAACATCTTAACTTACTATTGTAGGTCAAACTTCAGGTGTCCCTGTGAATAATCTGAGATGGATGATGCATCTGCTGCTCCGTTTTTTTTTTTCTTTTAACGGAGAAGAAAATAAGCCTTTTTTTGTTTTCCAAATCAAGAAATTATTCTTCTCATAAATAAGATCGTTGTGTCTTTAGAGAGTGATGTATTAATAATCGTGTGAGGGTAGCTAGTTGTTGTAGCTTTTTAGAAAGCAGCAAACTAAGGAACTGCAGAAGGAAATGGCAACCCCCTCCAGTATTCAGTATTCTTGCCTGGAGAATTCCATGGACTGAGGAGCCTGGTGGGTCCATGGGGTCGCAGGGTCAGACACAACTGCGTCACCATCACTCACTCAAATCAAAGAATAATCTAAATGTGATACCTTCATCACCTGTAAGCATAGAGTCTTGAATGATGATTACTTTAAAATGAAATCTCTTAATAATTTTATTAAATAACATTTAAAAAATAAATAAACAATAAATACATCTCTGCCTTCACTTGCCTCATTAATTAACTTTGTATACACTTGGAATGTAGGCTGCCCAGGTGGTGCAGTGGTAAAGAATTACTTGCCAATGCAGGAGATACAGGAGGCGTAGGTTCGATTCCTAGGTCAGGAAGATCCCCTGGAGGAGGAAATGGCAACCCACTCCAGTAGTCTTGCCTGGAGAATCCCATGGACAGAGGAGCCTGGCGGGCTGCAGTCCATGGGGTCTTACAGCGTTGAACACCGCTTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTGTGGCCCACCAGGCTCTTCCATCCATGGGATTCTCCAGGCAAGAATACTGGAGTGGGTTGCCATTTCCTCCTCTGGGGGATCTTCCCGACCCAGGAATTGAACCTGTGTCTCCCAAGTCTCCTGCATTGGCAGGCAGATTCTTTACCACTGAACCGCCTGGGAAGCCCCATGTATTGTATATACGTGTGTTTATATATATGTATAATTTATATATATGTATAAACTCTAAATAAACAGTAAATACGACAAACTTGCCAGTTCTGCAGGTGCAGTTTTCCTACTAACACGCCGCGTTCTGTGTTGCAG
Seq C2 exon
GTAGACTATTCCGTCATAGCCTCACAGGCGGGGGCCACACTCAACAACCTCATGAGCCATGCACAGGAATTGGTGGCAAAGCTTCGTTCTCTGCAGTTTGATCAACGAGAGTTCGTGTGTCTGAAGTTCTTGGTGCTCTTTAGTTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009265:ENSBTAT00000012207:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0010425=Hormone_recep=FE(18.4=100)
A:
NA
C2:
PF0010425=Hormone_recep=FE(23.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development