BtaINT0103669 @ bosTau6
Intron Retention
Gene
ENSBTAG00000019327 | NRAP
Description
nebulin-related anchoring protein [Source:HGNC Symbol;Acc:HGNC:7988]
Coordinates
chr26:34405078-34405985:-
Coord C1 exon
chr26:34405881-34405985
Coord A exon
chr26:34405183-34405880
Coord C2 exon
chr26:34405078-34405182
Length
698 bp
Sequences
Splice sites
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
3' ss Seq
TCGTGCTGTCTCTTCGCCAGGTG
3' ss Score
9.3
Exon sequences
Seq C1 exon
GAGTATCCAGAAGACTATGAGCAACAGAGAGGAAAAGGGAGTTTTCCAGCCATGATCACACCTGCTTATCAAAGGGCCAAGATCGCCAACCAGCTGGCCAGCCAA
Seq A exon
GTGAGTGTCTTACTGCTAACTCACCATTGATTACACTAATTTTTGTCATTAGTGAATCCCTGGGATTCAGGTAAAATCCAACAGGAGAGTTCTTTGGGGGCAGTAGGTACCCTGAGTACAATATTATGAAGAATACTGTGTTCTTATCTTTTGTATATCAGTCATTCTCTATGCCTGTGCCTCCTCTATCAATGGAGAGAAGACCATGTCACTCACCCTGAAACTGAACCAAATAATATTTCGAGGTTAAGCATCAAGGACACTGATCTTTATTAAGAGGATGGCAGATCCTACTGAAGAACAGCATAGCTGGTTGATTTAGAGCTCAGATTCTGGAGCCAGGTGTATTGGGATTCGAATCCTGGCTCTCTTGCTTCATATCTGTGGGACCCTGCACGAATTACTTAACCTCTGTGTTCCCCAGCTGCTCATCTGTAAAATGGGGCAAATCATAGTCCTGCCTCATGTGATTGTTACGGAGACAAATGAATATTTGTTCAAGTTTAGCAGTTCCTGGCACTCTCTTGGACTGAACACATGTGCGTGTTTTTGGAGAGGAGCCCATAAAGCAGGCCAGAAAGACTTGCCATAGGTTTGCCTTGAGTGTTGCCCAGTGGTGTAGCTTTAGGACAGCTGCAGGGAGAGGTCCTACAAAAGCTGCTGGGTGTTACCTTGACTTCGTGCTGTCTCTTCGCCAG
Seq C2 exon
GTGGAGTACAAGAGAGGGCATGATGAGCGCATCTCCAGGTTCAGCACGGTGGCGGATACCCCCGAGCTGCTCCGGGCCAAGGCTGGTGGACAGCTTCAAAGTGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019327:ENSBTAT00000025740:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.514 A=NA C2=0.629
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PU(55.2=45.7)
A:
NA
C2:
PF0088013=Nebulin=PD(37.9=31.4),PF0088013=Nebulin=PU(55.2=45.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCAGAAGACTATGAGCAACAGA
R:
ATCACTTTGAAGCTGTCCACCA
Band lengths:
206-904
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]