GgaINT0041822 @ galGal3
Intron Retention
Gene
ENSGALG00000008914 | NRAP
Description
NA
Coordinates
chr6:28954900-28955934:-
Coord C1 exon
chr6:28955830-28955934
Coord A exon
chr6:28955005-28955829
Coord C2 exon
chr6:28954900-28955004
Length
825 bp
Sequences
Splice sites
5' ss Seq
AATGTAAGT
5' ss Score
8.62
3' ss Seq
TATACGTATCCTTCCCCCAGGTG
3' ss Score
11.08
Exon sequences
Seq C1 exon
CAATATACAGAAGAATATGAGCTGCGTCAAGGCAAAGGCAGCTTTCCTGCTATGATCACTCCAGGTTATCAGGTGGCTAAGAGAGCCACTCAACTAAGCAGTAAT
Seq A exon
GTAAGTGTTAGCTTTTTTAACCATGTATTAGACTTCCTGAAGGTGGAGAATCCTGGGTTTAGGCCATTCTCTTTAGACAGTATACTCTGTGATGAACATAATTCTACAAAATAAAACTCAAATGTGATGCAAGAAACACAATTAACAAACTACTTGCTTTGAGAAAAATAGTCGTATAAGATAAATGACAATACAAACATTTCCTGGAAGATAAAGCAACTTTTTCTGTAATATATTATAACCTGAATAAGATCATGAGCACTCCAAAGCATTTACTTCATTGCTTTTATTTTCATTTGGTGGCTTTATTCATCTTTTTTTTCCTCATCTTCTGATCTTTTCCACCGTCTTTATTATATGAAATTAAATACTGTTAATATTGAACTTAATTCATTTACAAGCTAAATTAGATCATATATACACACAAAATTGCCTTTCCATAAAAATAATTCAACGGAAAGTGATCAAGTAAAAATAAATCCTGAACAAATGATTTTAAGGCATTACATTGTTTTTCTATCTGTATTGTCTGTATTGTTACTGCAGTATGATCTTAGTAGTGTCTGTTCTTGTAATATTTTGATCAAATGTGTGGCTCACATAGATTTAGTATCATTGAAAACTTTCATTATCCAGGGCCACTTCTGTCTCCTTCCAGCATTCACTTTAAGCAAATGGAGAGTTCAGTATGCCTAAGACTCGACTCTGCTGTGGGGAATCTCTTTACTATTGCTGCTCACTTTCTACTGATACTTTCTGAGAGAAAAAATATATTTGCTACTTCTTGCTTGTAATATGTATTTTATATACGTATCCTTCCCCCAG
Seq C2 exon
GTGGAATATAGGCGGGGACATGAAGAGAGAGTTTCAAAGTTCACCTCTGTTGTAGACACTCCAGATATACTTCACGCAAAGGCTGGAGGGCAGCTTGCAAGTGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008914:ENSGALT00000014498:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.229 A=NA C2=0.371
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PU(55.2=45.7)
A:
NA
C2:
PF0088013=Nebulin=PD(37.9=31.4),PF0088013=Nebulin=PU(55.2=45.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATACAGAAGAATATGAGCTGCGTCA
R:
ATCACTTGCAAGCTGCCCTC
Band lengths:
206-1031
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]