Special

RnoINT0103067 @ rn6

Intron Retention

Gene
Description
nebulin-related anchoring protein [Source:RGD Symbol;Acc:1306731]
Coordinates
chr1:277171754-277172608:-
Coord C1 exon
chr1:277172504-277172608
Coord A exon
chr1:277171859-277172503
Coord C2 exon
chr1:277171754-277171858
Length
645 bp
Sequences
Splice sites
5' ss Seq
CAGGTGACA
5' ss Score
5.49
3' ss Seq
ACTCAGTTTCTCCTCATCAGGTG
3' ss Score
6.9
Exon sequences
Seq C1 exon
GGGTACACAGAAGATGGTGAGCAACCGCAAGGCAAAGGGAGCTTCCCAGCCATGATCACCCCTGCCTACCAACGGGCCAAGGCAGCCAACCAGCTGGCCAGCCAG
Seq A exon
GTGACAGTCCCCGAGCTCACGTGGTCCCTTGTTGATGCTAACTTTTGCTATGACTAGAGCCAGCTCTGAGATTCAGGAGAACAATATGAAAGAAATGTTATAGGGCTGTGAAGAGAGCCATGCTTTCCCAATGCCATGTCTTCTGTGCGGTGATTGGGCCACGCTTACAAGATGTGGAAGGGGGAGGATCCAGGGACCCTGTAACTTACCCATTGGCTAAAGTAAATGTTTCTCTGAGCTGCTGTCTTGTCTTAGAGAAGACATGGATTTACCTGGAGATTGGCGCAGCTTCTGGGTTAAAGGCTCAGGTTTTAGAGACAGAGACTTAGGATCGGAATCCCAACTCTCTCATTCTCTGTGTAGCTCCTGTCAAGTTACTTAACCTCTCAGTTATTCATGGTAAATAATAGTCTCACTATTATGGGCCTGTTGAAGGGCGTCCCATGTGTTGCTATTTGGTGACATTTTAGAAGTGCCCGGTACTCTGTAAGTTGGTACATTAGCAAAGATGATGTCTGTGGGTACAGACATGGAACAGGTTTGGTTTAAGGCCTGAAGATGTAGTTCTAGAGAGTGGTAGGGCAGGGTTCTCACAGAGGTTTGAGGTAGGCATGATGCCACTCTGACTCAGTTTCTCCTCATCAG
Seq C2 exon
GTGCAATACAAGAGAGGCCACGATGAACGGGTCTCCACGTTCACTCCGGTGGCAGACACTCCCGAGCTGCTACGGGCCAATGCTGGGGGACAGCTTCAAAATGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016714:ENSRNOT00000038017:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact

ORF disruption upon sequence inclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.743 A=NA C2=1.000
Domain overlap (PFAM):

C1:
PF0088013=Nebulin=PU(55.2=45.7)
A:
NA
C2:
PF0088013=Nebulin=PD(37.9=31.4)


Main Inclusion Isoform:
NA


Main Skipping Isoform:


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGGTACACAGAAGATGGTGAGC
R:
TCATTTTGAAGCTGTCCCCCA
Band lengths:
209-854
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]