BtaINT0103671 @ bosTau6
Intron Retention
Gene
ENSBTAG00000019327 | NRAP
Description
nebulin-related anchoring protein [Source:HGNC Symbol;Acc:HGNC:7988]
Coordinates
chr26:34403403-34403909:-
Coord C1 exon
chr26:34403802-34403909
Coord A exon
chr26:34403508-34403801
Coord C2 exon
chr26:34403403-34403507
Length
294 bp
Sequences
Splice sites
5' ss Seq
GATGTAAGT
5' ss Score
9.11
3' ss Seq
CTTCTCTCCCCTCCAAATAGGTG
3' ss Score
11.58
Exon sequences
Seq C1 exon
GTGAGATACACAGAGGCCTATGAACAGCAGAGAGGGAAAGGCAGTTTTCCTGCTATGATCACACCTGCTTATCAGATAGCCAAAAGAGCCAACGAGCTGGCAAGTGAT
Seq A exon
GTAAGTGTCCCAGGCTATGTTGTCACAGGAGGGGAGGAGTCAGGAAGTTACCCAGACCTGGCAAGTCCAGCTTCCTGCCTTCTTTTGTGTGCACTGTGGATCCAAGAAGGAACTTTCCTTCAGAGTTTTCAGTCAGTTTTACTAGAACAATGATCAGGCAGTTTTATGTCTAAGACACACTCCCTAGACTCGAGCAGAAAAAGAGCATTCCGTAGACATTCATTTTGACTCTTCTAACCCGTGTGCATAAGAGGCTAAATTTACCAGGTGTATCCTTCTCTCCCCTCCAAATAG
Seq C2 exon
GTGAGATACCATCAACAATATCAAAGAGAAATGAAGGGAATGGCTGGCCCTGCTGCTGGAGCTGAGGGTCCGTTGCCAAAGGAATACATGGACCAGTATGGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019327:ENSBTAT00000025740:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.361 A=NA C2=0.943
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(37.9=30.6),PF0088013=Nebulin=PU(55.2=44.4)
A:
NA
C2:
PF0088013=Nebulin=PD(37.9=31.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGATACACAGAGGCCTATGAACA
R:
CTGGCCATACTGGTCCATGTA
Band lengths:
212-506
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]