GgaINT0041824 @ galGal4
Intron Retention
Gene
ENSGALG00000008914 | NRAP
Description
nebulin-related anchoring protein [Source:HGNC Symbol;Acc:HGNC:7988]
Coordinates
chr6:27028058-27029832:-
Coord C1 exon
chr6:27029725-27029832
Coord A exon
chr6:27028163-27029724
Coord C2 exon
chr6:27028058-27028162
Length
1562 bp
Sequences
Splice sites
5' ss Seq
GATGTAAGT
5' ss Score
9.11
3' ss Seq
ATTTTTTTAAATCCTTTTAGGTA
3' ss Score
10.13
Exon sequences
Seq C1 exon
TTGAAATACACTGAAGACTTTGAAGAACAGAGAGGGAAAGGCAGCTTTCCTGCTATGATCACTCCAGCTTATCAAATTGCCAAGAGAGCAAATGAATTAGCCAGTGAT
Seq A exon
GTAAGTGTCCAGAGCAGAGTATCTTTTTGGAAAGAACATGAAATTCTTACAGAAAATTTGGATTAAAATGCTTACTGGCAGGAATTTCATGAGCAGTGGGGATTTACAGTAGCAGTGCACTTTGTAAACAAAATTGTTTTCTTTTTAAGGAATAAGGTTGAGTTTTATGCACAAAGAGAATATCTTTTTATTTGTGAATAAACACTGTGGATTTCTGTGGGCAAAATTCTCCCCTTTACCCAGCCTCCTGTTGCATGGTAGGTAGAAGGAAGACAAAGAGTCAACTGAAGGTCTTTTGATTTCATTCTGCCTGACCACATATCAATTAGAAGGGCTGAAGAGCAGTTCTAGCTTACAGAACAGCCACAATACCCATTGGTGGCCTTATATCAGGGGAGGGCTGTGTTGTCAGGGTTCTGCTTTGCCATGGCTTACCGTGCTCCCAGTGAATCCTTGCAGCTCATTGTCTCTTGTGCACCATTTCAGGATGAGGCTTACATGAGCCAAAGAAGCAAGCTTCTTGAACACCAATTTTATATATTTATACACACAGATGCACATGTATGTGCATACGTTTGATATAGGAATATGTATATAAACAATTGCTTTCTATTCTACTAATTTTACTTGTAATCTTTTGTATGTGTGTGTTTGTTCAACTCCTGGATATACTGATCTTCATTGGCTTCCTTTTCCTTTCCAAACAGAGCAAAACCACAACATCCCCGTAATCCTTAAAAAACACTGTAAAAGGACATCAGTATTGCTTCAGAATACACAATCAATTGTGTTTTGTCGTTGGAGGGTGAAAGTAAAGCTCTATTTGTTGGATAAGACAATATATTGTGCTAACTCAATGGAAGTGAATTTAAAACATTATTAAGAGTCATCAAGGAGAATAAGAAGAGATCTGTAGTTCTGAAGGCAAAAGCAACTTACTGTAAAATGTTTAAATGCCTTCATTTGCCTTTGATCTGCGAAAGACCCTTTGTCAGCAAAGAAATGCTGATTAAAGGGCAGCATCAGGTTAAAGGCATTATTTTTACTTCAGCAGTACTGCAAATCTTGGTCCAAATTTGAAGGTTGATTGCCTAGAATTCCCTTGATCATTGGGAGATAGATCATCATCATTCAGAAACATTCCACTTTATTAATAGAATGCAGGTGACAATGTTGCAAATTAAGTAGGAGGAAGTGCTCTGTGATAACCATGAATTTACATTACAAATAGTTATGGTTTGTTTTTTTTTTTTTTAACCTGAACATCAGGGATTAGCCTCTGAGAAGCAGGGGGTATTGGATACACTGAACTCCTGGTATGGGTAAAAATGGCAAGTCCCACATTCGTTGTGTGTGTTATTAAGTACGCCACTATTTCTGTTGTTATATCTTTAAGTGGCATGTCTGACTTCTGAAGATTGGTGGCAATAGGAATTATCAACATGTGTGTGCCATTGTCTGGTTTCTATTATACAATATCTGTGGACTAGGGTAAACTCATCCAGATGATTGTGTGGTGTTTTTTTTTTTATAATTATTTTTATTTTTTTAAATCCTTTTAG
Seq C2 exon
GTAAAGTATCATCAAACGTACGAAAAAGAAATCAAGGGAAAAGCCAGCCATACAGCTGGAACAGATGTTACTTTTACAAGAGAAAACGTAGATCAATATGGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008914:ENSGALT00000014498:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.306 A=NA C2=0.571
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(37.9=30.6),PF0088013=Nebulin=PU(55.2=44.4)
A:
NA
C2:
PF0088013=Nebulin=PD(37.9=31.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACTGAAGACTTTGAAGAACAGAGA
R:
CTGGCCATATTGATCTACGTTTTCT
Band lengths:
206-1768
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]