RnoINT0103069 @ rn6
Intron Retention
Gene
ENSRNOG00000016714 | Nrap
Description
nebulin-related anchoring protein [Source:RGD Symbol;Acc:1306731]
Coordinates
chr1:277170038-277170528:-
Coord C1 exon
chr1:277170421-277170528
Coord A exon
chr1:277170140-277170420
Coord C2 exon
chr1:277170038-277170139
Length
281 bp
Sequences
Splice sites
5' ss Seq
GATGTAAGT
5' ss Score
9.11
3' ss Seq
TTTTTTCTTACTCCAAATAGGTG
3' ss Score
9.71
Exon sequences
Seq C1 exon
GTGAGATACACGGAAGACGGAGGGCAGCAGAGAGGGAAAGGCAGTTTCCCTGCTATGATCACACCAGCGTATCAGATAGCCAAAAGAGCCGCCGAGCTGGCCAGCGAT
Seq A exon
GTAAGTGTCTGTGCTTGTGTTGCCTTGTTAAGGAGGAAGCAGGAAGTTAACCTGGTTCGGGAGGTCCAACTTCCTGTCTGTTTGTATATATTCGTCAAAGCCAAGAAGTGCCTTTTCATCATAGTTGTCAATCATATTTTCCCAGTGACAGTGACTTGCTTCTTCTGTCTGTGATTTCTCCTCAGACCTAAGCAGAGATCGAAGACGCCACAGAGCCCTGGCTTTTACTTTTGTGGCTCTTGTACTGGGACTCACTGAGTTTTTTTTCTTACTCCAAATAG
Seq C2 exon
GTGAGGTACCATCAACAATATCACAGAGAAATGAAGGGAGTGGCTAGTCCTGTCGGAGCTGAGGGCACGATGACAAAGGACTCTATAGACCGATGTGGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016714:ENSRNOT00000038017:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.528 A=NA C2=0.892
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PU(55.2=44.4)
A:
NA
C2:
PF0088013=Nebulin=PD(37.9=32.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGACGGAGGGCAGCAGAG
R:
TGGCCACATCGGTCTATAGAGT
Band lengths:
197-478
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]