BtaINT0104252 @ bosTau6
Intron Retention
Gene
ENSBTAG00000044132 | NTN5
Description
netrin 5 [Source:HGNC Symbol;Acc:HGNC:25208]
Coordinates
chr18:55748199-55748815:-
Coord C1 exon
chr18:55748666-55748815
Coord A exon
chr18:55748253-55748665
Coord C2 exon
chr18:55748199-55748252
Length
413 bp
Sequences
Splice sites
5' ss Seq
AGCGTGAGT
5' ss Score
8.2
3' ss Seq
TCTTCTCTGCTCTCTCACAGGAA
3' ss Score
11.46
Exon sequences
Seq C1 exon
CCTGCCAGTGCCATCCAATTGGGGCGACAGGCGGTGCCTGCAACCAGACCAATGGGCAGTGCTCCTGCAAGTTAGGGGTCACTGGCCTGACCTGCAACCGCTGTGGTCCCGGCTACCAGCAGAGCCGCTCCCCCAGGATGCCCTGCCAGC
Seq A exon
GTGAGTCCTGGGGGCGGGGCCCCGAGTCCCAAGTGGGGTGGGAAGGAGATAGCCAGACCTCCAGGGGGCAAGATGGGTGAGGACCGGGTCCCTGGGAGACGGAAGCTAGAGACTGGACTCTGTGGCCTTGGGGAGGCGGAGACTGAAGTCCAGTCTCACCCTGTGGAGGAAGAGGCTAAGAGCCTGGATTCCTGGGTCTGAGAGAGGTCTTAAGACCGGGACTCCTGAGTCCAGAAAGTGGCGAGGGACCAGAACTCCAGGTCCTGGGGGAGAAAGGCAAAGTGTGCCTCCACTCTTGGGCTTCAAGGAAGCAGGATGCCCCTTGAGGGGTCTGGATGCCTGGTTTCCTTGGGGGCAGCGAGGTGCTGGTGGGAGGTGCTAAGAGGCCTTACCTCTTCTCTGCTCTCTCACAG
Seq C2 exon
GAATCCTAGAGGCGACAACCACCCTTGCTACAACCCCTCATGCTTACAGCTCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000044132:ENSBTAT00000063836:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.053
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=WD(100=96.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGCCAGTGCCATCCAATT
R:
GCTGTAAGCATGAGGGGTTGT
Band lengths:
200-613
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development