GgaINT0012416 @ galGal3
Intron Retention
Gene
ENSGALG00000009208 | NET3_CHICK
Description
NA
Coordinates
chr14:14770592-14771136:-
Coord C1 exon
chr14:14770987-14771136
Coord A exon
chr14:14770646-14770986
Coord C2 exon
chr14:14770592-14770645
Length
341 bp
Sequences
Splice sites
5' ss Seq
TCAGTGAGT
5' ss Score
7.68
3' ss Seq
TTTCCCCCTTTCTCTTCCAGAGA
3' ss Score
12.97
Exon sequences
Seq C1 exon
CCTGTGACTGCCACCCAGTTGGTGCTGCTGGCAAGACCTGCAACCAAACAACAGGGCAGTGCCCGTGCAAGGACGGCGTGACCGGCCTCACCTGCAACCGCTGCGCCAAGGGCTTCCAGCAGAGCCGCTCGCCTGTGGCCCCCTGCATCA
Seq A exon
GTGAGTCCTGCGCCAGATGAAGTGTCCCCAGGGGTACTTAATGGCCTGTGTTACTCAGGGCAGGTTCACCCAACCTGTTGTCCTTCTTAGTGAGCTCCCATCACATCTCTAGAAGTGACGCACTAAATCCCCTCTGCACCCCATTTGCAGAGGGCTCTGTCTGTGTGCCACCCCCAGAACCCTCGCCAGCTTCAGGCAGACCCCAGAGCTGTTGGTAAAGCAGCCAGGGCTGGGAGACCCCTCTGTCTGGAAAGGAAGGGCTACCCATGGTGGACTGGGAATGGCAACTGCCCAGGGCCGGGGACCCCCTTCCTTAAGACATTTCCCCCTTTCTCTTCCAG
Seq C2 exon
AGATCCCTGCCATCAACCCGACCTCTCTTGTCACCAGCACGGAGGCACCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009208:ENSGALT00000014992:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=WD(100=94.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGTGACTGCCACCCAG
R:
GTGCCTCCGTGCTGGTGA
Band lengths:
198-539
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]