RnoINT0103716 @ rn6
Intron Retention
Gene
ENSRNOG00000021016 | Ntn5
Description
netrin 5 [Source:RGD Symbol;Acc:1565197]
Coordinates
chr1:101674560-101675083:+
Coord C1 exon
chr1:101674560-101674709
Coord A exon
chr1:101674710-101675029
Coord C2 exon
chr1:101675030-101675083
Length
320 bp
Sequences
Splice sites
5' ss Seq
AACGTGAGT
5' ss Score
9.54
3' ss Seq
TTTCTCCTCTCCTCTGACAGGAA
3' ss Score
11.7
Exon sequences
Seq C1 exon
CCTGCCAGTGTCACCCAATTGGAGCAACAGGAGGGATGTGCAACCAGACCAGTGGCCAGTGCTCCTGCAAGTTAGGGGTCACGGGCCTGACATGCAATCACTGTGGTCCTGGGTACCAGCAGAGCCGCTCACCCAGGATGCCCTGTCAAC
Seq A exon
GTGAGTCCTATAGCACGTAAAGCCGTCAGTCCTGAACTGGGGTGGGGGAATGACAGTCCAGGTCTCAGGGGACAACTGCAGTGTGTGGCTTTGGTTTGGGGGTGGCAATGGATGAACCCTGAATCCTCCAAGAATTCGGGCTGGGAACTACAGACTCTTCAGTCTTGGGAAGAAGGCTGAGGTTCTGGACTCCTGTTCTTATGAGGGGAGGGGAGGGTCCTGGTGAGGATGAAGGATGGTTGTACCCTTGAGAGTTGTTTGCCTGGATTCCTAGTGGTGATTCCTAGAGTTTAAGATGTGTTTCTCCTCTCCTCTGACAG
Seq C2 exon
GAATTCCAGAAGCAACAACTGCCCTTGCTACTACTCCTGTTGCATCGCGATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000021016:ENSRNOT00000028524:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.039 A=NA C2=0.158
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=WD(100=96.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTGTCACCCAATTGGAGCA
R:
CTGATCGCGATGCAACAGGAG
Band lengths:
199-519
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]