RnoINT0103700 @ rn6
Intron Retention
Gene
ENSRNOG00000006970 | Ntn3
Description
netrin 3 [Source:RGD Symbol;Acc:619811]
Coordinates
chr10:13578675-13578999:-
Coord C1 exon
chr10:13578850-13578999
Coord A exon
chr10:13578726-13578849
Coord C2 exon
chr10:13578675-13578725
Length
124 bp
Sequences
Splice sites
5' ss Seq
TTAGTGAGT
5' ss Score
5.79
3' ss Seq
TGTTCTCCCACATTCCTTAGAGA
3' ss Score
8.28
Exon sequences
Seq C1 exon
CTTGTGACTGCCACCCAGTTGGTGCTGCTGGCAAAACCTGTAACCAGACCACAGGCCAGTGTCCCTGTAAGGATGGTGTTACCGGCCTCACCTGTAACCGCTGCGCCCCAGGTTTCCAGCAGAGCCGTTCTCCTGTCGCACCTTGTGTTA
Seq A exon
GTGAGTGACCTTGCCCTGTCTCAGTCACCTCAGCCAAAGTCATATCAGAAATTGACTGTCCCCCAAACCCTTCCTTCATATGTCCCTACTATCCCATCATAGACTGTTCTCCCACATTCCTTAG
Seq C2 exon
AGACTCCTGTCCCTGGACCCACTGAAGAAAGCAGTCCTGTGGAGCCACAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006970:ENSRNOT00000009735:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.039 A=NA C2=0.667
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=WD(100=94.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGTGACTGCCACCCAG
R:
GCTCCACAGGACTGCTTTCTT
Band lengths:
195-319
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]