MmuINT0111256 @ mm9
Intron Retention
Gene
ENSMUSG00000079662 | Ntn3
Description
netrin 3 [Source:MGI Symbol;Acc:MGI:1341188]
Coordinates
chr17:24344338-24344660:-
Coord C1 exon
chr17:24344511-24344660
Coord A exon
chr17:24344389-24344510
Coord C2 exon
chr17:24344338-24344388
Length
122 bp
Sequences
Splice sites
5' ss Seq
TTAGTGAGT
5' ss Score
5.79
3' ss Seq
TATTCTCCCACACTCCTTAGAGA
3' ss Score
7.02
Exon sequences
Seq C1 exon
CTTGTGACTGCCACCCAGTTGGTGCTGCTGGCAAAACCTGTAACCAGACCACAGGCCAGTGTCCCTGTAAGGATGGTGTTACTGGCCTCACCTGTAACCGCTGTGCCCCAGGTTTCCAGCAGAGCCGTTCTCCTGTGGCACCTTGCGTTA
Seq A exon
GTGAGTGACCCTGCCCTGTCTCAGTCACCTCAGCCAAAGTCGCATCAGCTACTGACTGTTGTCTGTTCCCTGAGCCTTTCCGTCAGATACCCCATTATAGACTATTCTCCCACACTCCTTAG
Seq C2 exon
AGACTCCTGTCCCTGGACCCACCGAAGAAAGCAGTCCTGTGGAGCCACAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000079662-Ntn3:NM_010947:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.039 A=NA C2=0.667
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=WD(100=94.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGTGACTGCCACCCAG
R:
GCTCCACAGGACTGCTTTCTT
Band lengths:
195-317
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: