BtaINT0104851 @ bosTau6
Intron Retention
Gene
ENSBTAG00000021896 | NUP214
Description
nucleoporin 214kDa [Source:HGNC Symbol;Acc:HGNC:8064]
Coordinates
chr11:101401509-101403810:+
Coord C1 exon
chr11:101401509-101401596
Coord A exon
chr11:101401597-101403748
Coord C2 exon
chr11:101403749-101403810
Length
2152 bp
Sequences
Splice sites
5' ss Seq
AGGGTCAGT
5' ss Score
5.85
3' ss Seq
TCTTTTCTTCCACCCCCTAGGAC
3' ss Score
11.03
Exon sequences
Seq C1 exon
GACCAGTGGCAACCAAGATAGAAACAGCTGTGACTTCTACCCCGTCTACTGTTGGGCAGTTCAGCAAGCCTTTCTCATTTTCATCAGG
Seq A exon
GTCAGTTGTGAACTTAAGTTTTGTGGCAGATCACCAGCATCCTTATAGATTGCTTCTCAAATCTTATAGTCAGTGGGTATACTTATATGAAGCCAGAGTTCTTATCTCCACAATGACACATTTAATGATAGTGGGAGTAGCTTAGTGTCCTAATGTAAATCTGTTTCCCCTTTTCCGTTCAATTCTATATGTGTGTTCTTACTGACTTGTTTGTTTTGTTGTTTAGGATAAGGCTTGTTTGGGTAGTGGGTCTGTGGTTGCTCTAGTTTATCACACAGATCTTTTCATTCTGACACCATCTGGCAGCTGGGTGAGACCTTGGATTGGCTTCGCTGCCCTGAGGGGTCATGTTGTACTAGACTGCTGAGCAATCAAAACAGTGGCCATTTAAGAATTTGGGTTTTATGTAGATGTGGGGAAGTCCATTTCTGTTTCATTTTTTTAAAAGTGATGATGTCTGTACTTGTCAAATTGAGTTACTTTTAAAAACAAAAGGGTCTTCTAACCCTCAGTCCAAAGGAAGTTCTTATTAATGTTGGAGGGGGTGTACCTTTTCACTATGCTGTGAACACTCATCATGAAACCGGTGAGAGTTGGCAGAGCCTCTCTCTGCTTGGGGTGGAGTTAGTCTCTGTGTGGCTGAGATAAATACTCATCCAAAGATTGTTTTCACCGTGAAGGGTTGCACATTCAGTTCCGTTAGAAAAGCCTCAAGCTCTTCCAGTTTATGCTTTGTAACTGGAATCACACTAACCACAGTCTCTTTTCCCTGCTGTGAGTTTGTTTCTTGAACACCCTTCTGCCTAACACATTACGAGAAAGGAGGGTGTTTGAATAGAATTTCAAGGGGGACATTATATATATTTTCCTGTAAATCATTATGTTTTCTACTCCCCAAAGGTAGTTGGGAGCACAATTTTAGAGAGTAGGTCAGTTCCAGGAGCTATTGCATCTTTTAATTAATCTTTACTTCTGTGAACCTGATAATCTTCTTCCCGTCTTTAAAATAACCTGCAGAGGTTTGGGTCATGGGTCAGTTGCTTACCTCTGTTACATCAAATTTCTTTACCAGAGTTGAGACAAAGAAAGAGATTTGTTTTCTTTTTTTTTAAGGTGAAAAAATATTTAACACATCTTAGGTGGTCTTGGACCATTTGATGAAGCCAGTGACGAATTTAAAAAAAGAAACCTAACTCTACTCTTTACTGTTACTTACTCTGTTTGATATGCTTGGCCCCTTCTGTTTTAAAGCTTTTTATCAGGTTGGCCAAAAAGTTCATTTGGGGTTTTCCATAACATCTTACAGAAACACCCAAATGAACTTTTTGACCAATCCAATAGTTTTTAATTTGCTATTTGAACTTTTCTCAGAATGAGTACTCCATTCTGGCTTAACTGGTGCTGGGTTTTCTTCTTTGGCTATAGTGTCTTCACTCACAGTGTGAAGAAAATGTACAGAAAGAGAGGAGAGGATGAAAAGAGTCGGAAAGGTTTTTGAGGGACGTTTCCTGGCAGCCTAATGGTTAGGGTACAGCTACAGCGCTTTCATTTCTGTGGGCTGGGTGCGGTGTGGGTCAGGGAAGTGAGATCCCACAAGCCACTTGGTGCAACCAAAATTTTTTTTTTAAGTTTTTGAACCAAATTTCCCAGCCAAGGACTAAGCGTTTTATCCGAACAGCAGAGACGGTGGCTTCCATTTCATACTGTCTGTTGTCTCCCCCAGTGGCATGTGCTGTCCTGATGTGCTCCCTGGGTGGGTCATAGGCTCCTCCTCATCTAGCCCGTCCCGTCTCCCTCACTAGGCAAGACACCCGCTCCGGCCACCATCCCAAGGCACAGTCCTAGTGCTCCTTCACTTTCCTTGAAATAGGTCCCCACCCCCTCTACCATGGAAAGCCTGGCTGTTCCGCCAAGGCCTCCTCACTTGCTGCTCCCCTCTCACCTCACGCACAAATCGCTTCCCCTCCCCCCCACCCCAGCTTTGAGAGCTCTGCTCTGCTGCTTCAGAGTCAATGTGCTTGTTGATATTTATCTATGGATTGCAGGTCCCTGGAGAGTAGATTATGTGAATGAATTATAAAATGTACTGTTAAAAGGGCAATGTTGTGCCTTAAGTCTGTTCACTTTTAACTTCTTTTCTTCCACCCCCTAG
Seq C2 exon
GACTGGCTTTAATTTTGGGATAGTCACACCAACACCGTCTTCTAACTTCACTGCCACACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021896:ENSBTAT00000029190:26
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.767 A=NA C2=0.636
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development