RnoINT0104361 @ rn6
Intron Retention
Gene
ENSRNOG00000023393 | Nup214
Description
nucleoporin 214 [Source:RGD Symbol;Acc:1304977]
Coordinates
chr3:11040740-11043482:+
Coord C1 exon
chr3:11040740-11040827
Coord A exon
chr3:11040828-11043423
Coord C2 exon
chr3:11043424-11043482
Length
2596 bp
Sequences
Splice sites
5' ss Seq
AGGGTCAGT
5' ss Score
5.85
3' ss Seq
CGTCTTTTTCTACTCCTCAGGAC
3' ss Score
9.22
Exon sequences
Seq C1 exon
GTCCAGGGACGGCCAAGACAGAGTCACCTGTGACCTCCACCCCATCTACGGGGCAGCTCAACAAGCCTTTCTCATTCGCCTCCCCAGG
Seq A exon
GTCAGTGTGTGAACTTGTTTGTACTAAGTCACTATCAGCCAGACCATGTCAGCCCTGAGGGCTCACATCTGTGCTGGTGCGTCTGCAGACAGTGGTACATCCGCAGACAGACAGTGGCAGTAGTTGACTGATGTTAGAACTGTTTCTCCTGTGTGGTTCAGGGCTATTGTCATATTTGCTCTGGTTTTAGCCTAAGCTTCCTTTCTTCTGGCAGAGAATGTCCCTTCTGTAGGTCATCAGGTGTGGCGCACCAGGTGTTTTCATTCGGACACCATTGAGTGATTAGTCAGCCTGACTCTAGAATAATCAGCCTACCCTGGATTGGGTCTCTTGACCTGTACAGAAAACATAGTCAAAGATGGTGATCATTCTGAAATTCTGATTTGTAAAGAGATGATAGGGTTTGTGGGGCTCAACAGAGACTCATTTAGCTGAGGCTGGCCTCAAATTTACTATGTGGCCAAAGATGCTCTTGAACTCCTGAACTCCTACCTCTACTTCCTAAGTGCTGGAATTATAGGATAACCCACCAGCCAGTGGGGATCTGTCTTCAAGAAACAGTGACAGGCATGAGTGTGGATTTGAGAATCAGGTTGATGAAATGAAAAGACTTTAAAACCTCGTCCGTTATTCATTAAGGACAGAGTGTCCCATTATTTTGGTAAAAGCCAGGCACATTGCTGGAGCTGGCCCTTCCTAGCTTGCCAGAATCAGAGTGTGACTGCCATCCACACCTGCCGGCATACTTGTTGCCACTGAAAGGCTGTGTGCTATTCGTGTTAGAGAAGCCCCTAGTGCTTTCACTGTCTGCCTCTGCACTAGGGCTCCACTCACCCGCACTCCAGGTCTTCTGAATAATGTGTTTCTGCACATCCTTCAGCAGAAAGTGAGAAGAAGCACTAGGTTAACTCGGACTGCGCGTGCGCGTCTCTCCATTGCTGTAAGTCATTGCATCTGTTACCTCCCAGAGATGAGTATAGAGCGTAGGTAAAAGCCAAGGATAACCGCATCTTTTACAAATACAATAATTAATCTTCATGTCTCTAAAAGGGTAGTGCTCTTCCAGTTTGTAAAGAAAGCTGGAAAGATTTGGGTCAGAGAGCCAATGGCTGATCTCTTTGATTAAATTTCTTTATCAAATGCCTCCACCTGCTTGCTAACCTAGACCTAGTCCTGGAAGCTTCTCACCTTCATACAGTCTAATCCAGGCCTAGAATGTTTTCAACCTCTGAGACTGGCTGCTGAATAAGCTCACCCTTTCTACTGTCTCTGAGCTCTTTCTGGCTTGTTCAACTCAGCTCTTATGGCTCAAACTCCTCTCCAAGCTGACTGATTCAATCTGGCTTTTCTCTTCAGCCTCTGAAGTGCTCGGCTTGGCATCAGACTAACTCTAGCAATCTGTTCTAATCTTCTGGCTCCTCGTTCTCTGGCTTGTTCTGTCTTCACCTGTGTTCTCTCTTCAATCTGTTTCTGTAAAACTCTCCCAGGAAAACTGCCTCCTTCTCCCCCTCCTTGCTGTTCTACTCTCCCTCTCAACTCTACTGTATTCCTGTACTGTACTGTCTTCCTCCTGTACTGTCTCTCTCTCGAGTAGCTTCCCTTCCCTTCCTCTTTTCTTGTGAGAGCTGGGCCTATCCTATTCTGATGTCACTTTCAAACATGGCTGCTTCCTTCTACAAACTAACTTTAGCTTCATTGTTTGGGATTAAAGGTAAGTACTAAGAGCTTGTATTCCCGACAGAGGGATTAAAGATGTGTGCTATGGGCTAGGAGATAGCTCAGCGCTTGAGAGCACTGACTGCTCTTCCAGAGGTCCTGAGTTCAAATCCCAACAACCACATGGTAGCTCACAACCATCTGTAATGGATCTGATGACCTCTTATGGTGTGTCTGAAGACAGCTACAGTGTGCTTATATGTAATAAAATAAATAAACCTTTAAAAATGAAAGGGAGGAAGGAAGGAAAGAAAGGTGTGTGATAGGGTTGAGCCAATGCCCTAAGTAGAGGCAGGTTCAGATGTCCTCTAACACTGAATCCTGGCATTATGCACTGAATTAGATAGGCTTATTTTTGAGTTATTCAGTGGAAAATCTGCATTCCTGCTGCTGTTAACAGTCTGTCGCTCTGTACTCCTGCTGCCACCTTCCCTGCACAGCAGCACTCCCGCCCACATGCTCCTTGACTTAAGGCAGGTGCCCAGAGATTCTCCCTCTTCTCCTGCTCCTTGACTGCCTTTCATTGTACACACTCACTCGGCAGTGTCTGCTCCAGTGTCATCTGCACAGGCCTAGTGTGTTTTTACTGCTGCACTTTACTTTTTAAAACACAGGTCTTCCCAGGCCTCCTGTGGAGAACCCAGCCATCCAGCCAAAGCCTTCCTGCTGCTGCTGCTCCTTCCTGCCTCCTCTCCAAAGTGTGTGCCCTGCTTGAAGGTGCTGGACACCTCTGAGATGTGTATTTTAACTCAGCTGTTGCTGATCACTAGATGTGAATTCTTCAAGGGCATATTGTATGAATGATTATAAGGAGGAATCTTTAAAAGCCAATGCTGTGTTAAGTTTGCTCCGTTTTAACTCGTCTTTTTCTACTCCTCAG
Seq C2 exon
GACCTTTACTTTTGGGACAATCACACCAGCCCCATCTTCTAGTTTCACTGCCACACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000023393:ENSRNOT00000037164:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.847 A=NA C2=0.557
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]