MmuINT0111943 @ mm10
Intron Retention
Gene
ENSMUSG00000001855 | Nup214
Description
nucleoporin 214 [Source:MGI Symbol;Acc:MGI:1095411]
Coordinates
chr2:32030707-32031308:+
Coord C1 exon
chr2:32030707-32030797
Coord A exon
chr2:32030798-32031249
Coord C2 exon
chr2:32031250-32031308
Length
452 bp
Sequences
Splice sites
5' ss Seq
AGGGTCAGT
5' ss Score
5.85
3' ss Seq
CTTCTTTTTCCACTCCTCAGGAC
3' ss Score
9.3
Exon sequences
Seq C1 exon
GTCAAGGGACAGCCAAGACAGAGTCCGCTGCGACCTCGACTCCATCTGCTGCAGGACAGCTCAACAAGCCTTTCTCATTCGCCTCCCCAGG
Seq A exon
GTCAGTGCTAAGTCACTATCAGCCAGATCCATGAAAGTCCTGAGCTCTCACAGCTGTGCCAGTCCATCCACAGTGTTTTAACTGTTTCTGTTTTGTGGTTCAGGGTTATTATATCTACTGTTTTTAAGCCTAAGCCTCTTTTTGTTTGGCAGAGAAAGTTTGTTCCCTTCTGTAGGTCATTGGGTGTAGCACACCAGGTGTTTTCTTTTTTCTTTTATTTTTTGGTTTTCCCAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCATTCTGTAGACCAGGCTGGCCTTAAACTCAGAAATCCGCCTGCCTCTGCCTCCTAAGTGCTGATCTCTAGTTGTAAATTCTTCAAGGGCATATTGTATGAATGAATTATAAGGAGGAATATTTAAAAGCTGATGCTGTGTTAAGTTTGCTCCATTTTAACTTCTTTTTCCACTCCTCAG
Seq C2 exon
GACCTTTACTTTTGGGACAATCACACCAACCCCATCTTCTAGTTTCACTGCCACACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000001855:ENSMUST00000065398:27
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.806 A=NA C2=0.905
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types