BtaINT0104856 @ bosTau6
Intron Retention
Gene
ENSBTAG00000021896 | NUP214
Description
nucleoporin 214kDa [Source:HGNC Symbol;Acc:HGNC:8064]
Coordinates
chr11:101429824-101434500:+
Coord C1 exon
chr11:101429824-101429976
Coord A exon
chr11:101429977-101434328
Coord C2 exon
chr11:101434329-101434500
Length
4352 bp
Sequences
Splice sites
5' ss Seq
CAGGTACTG
5' ss Score
9.04
3' ss Seq
TTTGCCTCTGTTTTGCTCAGGTG
3' ss Score
9.28
Exon sequences
Seq C1 exon
ATACCTCTAACCTGTTCGGAAACAGTGGAGCCAAGACATTTGGCGGATTTGCCAGCTCATCATTTGGAGACCAGAAGCCTGCTGGCACTTTCAGCTCTGGAGGAGGAAGCGTGGCCTCCCAAGGCTTTGGGTTTTCTACTCCAAATAAAACAG
Seq A exon
GTACTGCTCTGCCTATTTGCTTTGCTTATTGTTACATGTGTATTTAATGTGCATAGACTTCTGGAAGCAGAGCTCTCCAGGCCGGTTTTCGAGGGAGGTGACTTGGAATGTTGATGAAGATGCTCTTCCGCCAGATTCATTCTCTTCATTGAGCGCCTACTACATTCCTGACGCTGTTCTCTGTCTCCTGAGATGCACTAAGCGCAGAATGCATGCCATGCAGCCCTTAACAGAGTTTAGTGTCTTTGCAGGGAAGAAAGCATTGTAGATATTTACAGTTGCATTTAACAACCAAAGAAGGGAGCCTGTAAGACTGTAGCTTGAAACGTTAACAAGAAAGCATCCTGAGTCATATTTGCTTGGGTGCCCATTACCTGTGATGGGTAAGACAGATGGTCCGTGTAATCTCTTAGGTCTGTATCACTTTGTCTTTCCCAGGTCACTTTTCTTTAAACTTTTTATCGAATATAATCACATAACTATACCACATGCTCTTGTATGTATACAGTTTTCATAGCATAATGATACAGCCCAATTAATTTTCACTCTTAGAATATGCCTACTTAGGAATAAAGAACATTGCAGTACTACTTTTTATCCCAGCATTACTTTTAAAATGTATATTTGTAAACTGTGTCACTTTTTTTTTATAATCATGTATTATTATACTTGCAATTAAAGATTTTAAAGAACAGTACATATTTACCTGCAAAAAAAATCCTTCATCTCTGTCAGCTGCCCCGTCTATCCTATTTCTGTGTCTGAGATCTACAGAGGGGCTGCATACCTGCCCTTGTCTTGTGGAAAATTGTGTGAAAAGATTTTTGGGGGCAGGGAGGCTTAACCTGCTGAGAAAGCAGTTCGTTAAAGCAAATGCCCCACAGGTGAGCAGACAGGATGCTTCCCCCAGGTGTGTGTTGGGGACTCTCTGTGGGGATCGTAGAGGAAGGACCCTCCCGAAGGAGCAGCCGCCTGGATGCCTCTGACAGGGGAGCGTGGCTGCCCCGAATTACTACCTGGAATCCCACCTTTCAGAACCGAAGTTGCTGCGGTGTCCTAATGCACTGGGCACCTTTACTCAGACCTGTGCCTGGCGAGGGTTAGTCTTTGCTAGCTTTTGATGCTCTCTCCTAGAATCTGAAGTGGAGTAGGAATGAGCACCACAGCTGCATTTTGCAGCTTTGAGTGATTTAAAAACACTTCCTGCAGAGAGAGATTTAAAAACAAAAGGGCTGCAAATCTTTTGGTCCCAGTTAACAGGGCAAAAGCAGAGACATTACTTTGCCAACAAAGGTCCGTCTAGTCAAGGCTATGGTTTTTCCTGTGGTCACATATGGATGTGAGAGTTGGACTGTGAAGAAGGCTGAGCGCTGAAGAATTGATGCTTTTGAACTGTGGTGTTGGAGGAGACTCTTGAGAGTCTCTTGGACTGCAAGGAGATCCAACCAGTCCATTCTGCAGGAGATCAGCCCTGGGATTTCTTTGGAAGGAATGATGCTAAAGCTGAAACTCCAGTACTTTGGCCACCTCATGCGAAGAGTTGACTCATTGGAAAAGACTCTGATGCTAGGAGGGATTGAGGGCAGGAGGAGAAGGGGACAACAGAGGATGAGATGGCTGGATGGCATCACCGACTCGATGGACGTGAGTCTGAGTGAACTCCGGGAATTGATGATGGACAGGGAGGCCTGGCGTGCTGCGATTCATGGGGTCGCAAAGAGTCGGACACGACTGAGCGACTGAACTGAACTGAACAGGGCAAATAGCACTTGACTAAGATAGTTTAGTTTATTAATCATCAAGACCTTCTAGTTTATCTTTTGAGGAACCTGATCATGTTTTCTTCAACTCTTGTGTCCTCTCTGTTGTTCCTTATCCTGGGGTCACATCCCAGTTGAGTTGAGAACTTGACCCTTTTATTTTTTCAATCTGAGAGAAAATGCATCCACCCACTTTTCAGACTGGTTTTTCCTATTTGATGACTTGCCCCATGGAACCACCTCAACTGAGGACTCCAGGAATTTCAGATTGTGGGTTTGGGTGGGTCTCTAAAAAATTCCAGAAGCAGCCCTCCTCCCTTGAGTACAGTTGCAGTAAAAAATAACACCACTGGAGATGATTTGAACAGAGGACAGGAAGTGGGACAGACTGACAGTGACCTCCTGCTGCCCCAGTCCACTGGGTTCACTCCATGTTCTGCCGCTGGAGTTACTGGCTTTGGTGGCAGTGGAGGGGGCAGAGTGGTGGTAAGGTGCTGGGTGGTCATGTGGTCACCCTGCCTTTGTTCCCATCCAAGCTCTGCCGCTCACCAGTGGCTCAGTCTAGACATGGGGCATCTTCTCTGAGCCTCGGTGTCCTCGCCTGTGAAGTCAGGGTCGCAGGTTTACAGGGAGGATTGAAACTGGTGAACAGTACCTGGCATATGGAGGACCCTCAGTAAGTCGGATATCTTATTGAGTACTAAACTTCTGTCTCTTCTGGAGAAGAAAACATGAAAGTGTAAGCATCTAACAAAATTGGAACCCTCAGCATCAGCAGTGAGTTGTCCGTCTCCAACAGTGAAGCCCGGGTCCCCGTTCACTCTCTTCACTCCTTCTAGCTGTGACGTGGGTCTGTCGTTTTGGGGCATTGTGTGTGCCCGTGTAATCTCCTCTCTCTATCCAGTGAGTGTACTTTCTGTATCGTGGTGACTTCTCATTTTTCACTCACCTTCCACCAGGAACTCTGAACAATATTGAGTACAGAGTACTAGGTGAAGGTCTGTGTGTCCAGGAAGTGTAACCAGATCCATGATCAGTCTTAAATAATTCAACTGCAAGGGTTTTTTAGCACTTTTTTTTTTTCCCAGTCTGTTATATTTGTAACCCAGCAGTCTCCATTATCATGGCTTGGAATTTCACTCGAGGTTTTAAAATACAGACTGTAGACCCAAACGTGAGCCTGAACAGAAATCGCCTTCTCAGTTGTGCTCCTGCTGTTCCTGGTGAATGAGCAAACGACCGAACCACAGAGCAGCAGCTAACTAAGGCATTCAGCTGGCAGCTCTTCATATCCAGCATTTGCTCCTGCCTGATGCAGGCGGCAGAAGCTTGTGGGTGATTACACTCATAATAAGAAGGCCTGGGTAATCCCTCTAACACCGGGATTCACGTTCCACTTGGGCGAGAATGAGGGCCCCATCTCCCTGGTCCAGTTGCCTCCTGGCTTGGCCTGGGCCACCATTCCTCCCTTCAGAGCACATCTCTTGTACCGTTTTGCTGTGTTCTGTTCAATAGACGCTCAGCGAATGTCTCTGCTAATGTCCTAGAATGACGTCAGCAGAGTCTTGGGGTTTGGGAATCCTCCTCGGGGGCAGGAAGAACAGTCAGGCAAGGGCCTTCTGTCTTGCCGCCTGACAGGCATCTAGCAGTCGGGGGAGGCGGCCCCAGGCACACCTGGCCCTTCGTGTGCGGCCACCTGCGGGGGTGCCGCCCCCGTGGGCCTGTGTCCACAGGAGCAGCAGCGCTGGGAGCCTGCCCTCGGGCTGGTAGACTCAGGGCTCGCCTTGCCCAGTGCTGGAGGGTTTTGTCTCATTCATACAGCAGCCACCCTCCAGACAAGAAACACAGTGTGCCTTTTCTATTGAGGAGTAGTTCCTGCCTGCAGAGAGAGAGCTTTTTGTTCTTCTGTGCAGGGGGAGGGAGACTCCTGAGACAGACGGAGAGGCATTGGGCTGTAAATAAGTAACGAGCGCCTGGCCGAGCGCCAGCACCCCGTGGCGCTGCGTCTCCTCGGAACCCTGCTCGCAGGTCCTCCCTGAGAGGGGACCGTGAGCCTCTAGTTCATGTTTTTGTGAAGCTAGGGACCTTGCCTATGTGATGATAAGTAATAAACTCTGACCATTTTGACAACTGGGTAGAGATTGAATCTCTTGAGTGTGACTTTTCAGTGGACTCTCAAAACGTAGCAGGGCGCCGGGTGGGGGTCTGACGTGGCCTAGCTGGGTTTCCTGGCAGTCGGACCTCACGAAACGTGGAGCTAACGAGTCCAGCTTGCCTCGGGAAGGCCCGGGGATCTCACAGACAAACACGAGGTCTCCTGGGTTCTTAGAACTCCAAGTGAGCTCCTACGTGGACCGCAGACCCTTCTGTTGGAAATGGAGGGGTGGCGATTTGGTTGGGTTTGGGTTTATTATTTTGCTGATAGAAGGGGTGTTGCCCTTTGCTATAATTTTTTGAATTTGAAGTTCTAACGTATTTTCCCCTTTCTCCTTCTTCCTCTTTTGATTTGGTTTCTCACTGCTCATTGTCTTCTCTTCCTGTCTCCTCCTTTCTTTCTCCCCGTTTCTGTTTGTTTGCCTCTGTTTTGCTCAG
Seq C2 exon
GTGGCTTCGGTGCTGCTCCAGTGTTTGGCAGCCCTCCTACTTTTGGGGGATCCCCTGGGTTTGGAGGGGTGCCAGCATTCGGTTCAGCCCCAGCCTTTACAAGCCCTCTGGGCTCGACGGGAGGCAAAGTGTTCGGAGAGGGCACTGCTGCCGCCAGCGCGGGAGGATTCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021896:ENSBTAT00000029190:31
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.255 A=NA C2=0.362
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development