RnoINT0104366 @ rn6
Intron Retention
Gene
ENSRNOG00000023393 | Nup214
Description
nucleoporin 214 [Source:RGD Symbol;Acc:1304977]
Coordinates
chr3:11061338-11065648:+
Coord C1 exon
chr3:11061338-11061487
Coord A exon
chr3:11061488-11065476
Coord C2 exon
chr3:11065477-11065648
Length
3989 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACT
5' ss Score
8.63
3' ss Seq
TTTGCCTCTGTTTTGCTCAGGTG
3' ss Score
9.28
Exon sequences
Seq C1 exon
ATACCTCTAACCTGTTCGGGAACAGCGGAGCTAAGACCTTCGGAGGGTTCGGCTCCTCCTTCGGGGAGCAGAAGCCTGCTGGCACATTCAGCTCTGGTGGTGGGAGCGTGGCATCCCAAGGTTTTGGATTTTCCACTCCAAATAAAACAG
Seq A exon
GTAACTCTCAAGATGACCATGCTTACCTGTGCGTGCAGTGAGCTTGTGTGAACTGCCCCTTGGAGGCCACAGCCTTGGGTGCTTGTCTCAAAGGGCTGGGGTTACAGTAAGAAGTTAGTGACTTTGTTCTCCAATGTGTTTTTGTATTTATTGAAAATCTACTGCATTTCTAATACATAAGTCATGCTTCTAAAAAAGAGAGAGAATCTGGATGTGGTGGCACACTCCTTCAGTCCCAGCTCTCCAGACGCAGAGGCAGAGGCAGATACCCAAGTCCAAGGTCTACATAAGAAGGCCGTCTGTAAAACAAAACGAAACAAAAAACGGAGATGTGTAAAGTAGTACTTCAAAGAATTGAATATTCTCAAGAAAGGCTATCCAAGTATTTAACAATTATAAGAAAATCAATCCAACATGGCAGTGCATGCTTGTAACCCTATAGTTGGAGGACAGAGGAAGCTGGATCTCTGAGTTTGAGGTCAGCTTGGTCTACAGTGTGAGACCCTGACTCAAGAAGAGGGGAAGTAAAGGGACCTGGCAGGACATTACTCAGGCTTGCTCTTGAGGGCCTCTTGCAGCACAGGACTCTCAGAGTCCCACAGCACTCAGGATCAGACGCTCACCCCTAGGTCATGTTTCCCTTCCCGAGTCACTGTTTTAGGCTCTGTTTGAGTGTGGTTTTCTATTTCCCTGTACAAACAAAAGCTGCACCTCATGCAATTCATGATCCTCCAGCCTCAACCTGCTAGACACTGGGATCATGGGTCTGGGCCACCCTTTTTAATCTTTTACTAGAAATACACATCTATAAACTTTTAGATAGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTAAGGCCCTGGGTTCGGTCCCCAGCTCCAAAAAAAAGGAAAAAAAAACCTTTTAAATAATTTTATGTACTTTTCACTAAAGGTCTTAAAAGAACAGTATGATGGCTGGGGATTTAGCTCAGTGGTAGAGCGCTTACCTAGGAAGCGCAAGGCCCTGGGTTCGGTCCCCAGCTCCGAAAAAAAGAACCAAAAAAAAAAAAAAAAAGAACAGTATGCATTAATATGAAGTGTGTTGTTTAATGTCTGTTTATTTTGTGGATGTTTGCCTTCGTGTGTGTCTGTGTACTGTGTAGATGCCTGGTGTTCATGGAGGTCAGAACATGGTGAGGAAGAGTTACAGATGGCTGTGAGCTGCCACATGGGTGTGGGAAGCAAATCTAGGTCCCTTAAGAGCAGCCATTGTTCTTAACTACCAAGCCATCTCTCCTGCCCATGAAACCCATTGTTAATTTCTGTCACCTGCCTGTCTGAGGTCTGTCTGCCTGCAGTGCTGGTCCTGTTGGTGGACGACTGGAGTACGGGTCTTGGGCGGGGGCAGAGACAGTGCTGCAGAGAGGGAGGGGCAGGAGGGTGCTTCGGAGAGGCGCCTTGAGCACTCCGTCTCCCTGGGGAGGGGGCAGGGTTGTTTGCCCTTGGATAGGTGGCCTGCTTTCAGTGTTCCCTGCCTGAGGAGGTGGCGCTGATCTTGGAGTGGCTGACCCAGATTTGAAGGTGACCCTGAGGTGCAATGGCTTCTAGATAAAGTGCGGTGTCCGTTCTAAGACTGGCTTGGCAGCTTAATGCTAGGCTACTGGTTCTTAGCATCTTTTCCCTAGAACCTGATGAGAGGAACTAGAAAAAGGCATTGCAGCTTCATTTGGGGACAAATGCAGAATAACTTAAAAATGAAAAGGCCACAAAGCTCTAATGACGAGGACAAGCTTGGAGCTGGTGGTACTGGTGTCAGCATGGCCACTTGGCAGCCTTTCTCAAAAACCTGATCGTGGCTTCCCGCATGATCATTTACAGCTGTCATTTACACCAAAATCAAATACGTCGTTAACCATTGAGCCTTTTCTATCTTTTTAGGTACCTGATGTTTCCTTTACTTCTTCTGTTGTTCTGGGGTGTGGCTCTGTGTTCCAGATTGTCCCAGTGGATTTGAATTGAGAAGCTGGTGACTGTGTTTTCTGTCTTAGAGAAAATATACCCCCCACCTAGACATTTTTTTTCTAATTCTGGTTTTTCTATTTTGTGAGCACCATCAGAACTAATACTGTTGGAGGCCACCAAGAAAAGGACAGGAGACGAACCTGACCATGGCCTCACTGCCAGCTAGCCCAGGGTCTACAGGCATCGTCATTAAGCCATGTGACAGAGAGGAGAGCAGGACACCTGACAGGGCCTTGAGAGGTTCCAATCCCACCTCTGCCACTTAGCCATGCTGAAGTTAGATGAGAAGATATTTTGAGAGTTCTGTGACCACTGGAGGAAGGGGCCCAGGCTAGGGGGGATGGGAGCTACCACCACAGCTGGAGGCTCAGAGAACTTAGCATGTGTGTGTGGCCTGCAGACCTGCTTCCTGGTTGCTAGTACAGACAGCGGCCTGCAGCTGAACTCCTGCTCTCATTTGGAGGAAGTTGCCTGACCCCAGACCTAAGACCAAAGCAACCATTCTATTTCATTTAGCAATGGGCCAAGTTTGTTTTGCTTTTGTGTGTGTGTGCCTGCCTGCCTGCCTGCCTGTCTGTCTCTATCTGTCTGCTGGCTCCTCTCCAAGTTAATTTCTGGGTCATTAAAACCTCTCATTTTTCGCTCACATTCCAGCAAGAAGTCTAAACAATATTGAATACAAGGTGCGCGGTGAAACCTTGTCTGTCTAGGAAGAGAGTGCAACTAGATCTGTGGTCAGCTTAAATAATTAAAGGACAGTGGTTTCTTAGCACTTTTTTTTTCCATTCTGTTTATGTTTGTAAGCCACCAGTCTCTGTAGCACAGCCTGGAATTTCACTCAAGGTTTTAAAATACAGAATGGTAACCCAAACACGAGCCATGGCAAAAGTACCTCCTTAGCTGTGCAGCCTGTGAAAGACAGACACACAGTTCAGTCGCAAGCAACAGCCTCGGGCTGGCCTGACCATGCTTGCCTGGCTACATTTGATCTTCCTGATTGTGGGGGCAGAGGCAGGGGCGTGAGGACAGTAAAGCCCGTCTGCCTCTGGAGCAGGAGACTTGCTGTCAGCAGAGACAACCCGCCTCCTTGTCTGCACATGTCCTCCATCCAGCTCAGCGCACCCTCAGTACCTTTCTCTTCCGAACCTCAGAACTAGAGCAGCATCTTAGAGGCTCAGGGGATTGGCTCACAGGCGGTCTCCCCACAAGTCAGAGGAGGCTGCCCCGTGCTTGACTTGACCCTGATCTTTTGTCTCCGTCTTGCTGTAGTGGCCCAGAGTCCTGATCTGGGCACCTAGGCCATGCTCACAGCTGTCTTAACACCTGGTTAATTTACACTGTGGCCTTCATCCAAAAGGAGGGCAGTGTGCTTTGTGATGCTGCAGAAAAGCACAGGAAGACTCCCTCTAAGCCGCAGGTCAGGGCATTGGTGATAGGCCCACAGCCACCTGCCTGTAACTAAGTAAAGGTATGTGGCTAGCGGCCAGAATGCATCACCCTGCTTCTGTCGTGACCCAGTTCATGGGTTCTGCCAGGGAAGGGGCTTTGAATCTCCAACTTTCATTAGCTGGGTTTCCCCAGAACTAGGAGCCTGGTGTGTGTGGCAGTATACAGTAAAACCTGCCACCCTGCCACCCTGCCACCCTGCCACCGCTGTGTTGAGACACCAGGAGGCACTAACCCTGGGATGGGCCTGCAGAGTTGGGGTGGTTTGTTCTCAGCAGGACTTGAGACAAGTTCCACCTGCTTCAGTAAGGCACCGATGTCCTCAGATCTCTTGTTGCCACAGCCCCTCTGCTCCTACTGGGGGAAGCAGTTTGGCTGAGGGATTGAGGTTGGGGTTTTGTGCTTTTTGGGTCCTTGTGTTGGAGTTACTGACGTCCTATCTCCCTCTCTCCTCTTTTGGTTTGGTTTCTGGCTGCTCGATGCCTTCTCTCCTGTCTCCTTTCCTTTCCCCCTGTTCTGTTTGCCTCTGTTTTGCTCAG
Seq C2 exon
GTGGCTTCGGTGCTGCTCCAGTGTTTGGCAGCCCTCCTACTTTTGGGGGATCCCCTGGGTTTGGAGGGGTGCCAGCATTCGGTTCAGCCCCAGCCTTTACAAGCCCTCTGGGCTCGACGGGAGGCAAAGTGTTCGGAGAGGGTACTGCGGCCGCCAGCGCAGGAGGATTCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000023393:ENSRNOT00000037164:25
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.451 A=NA C2=0.379
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]