BtaINT0105350 @ bosTau6
Intron Retention
Gene
ENSBTAG00000030567 | ODF2
Description
outer dense fiber of sperm tails 2 [Source:HGNC Symbol;Acc:HGNC:8114]
Coordinates
chr11:99064322-99065133:+
Coord C1 exon
chr11:99064322-99064507
Coord A exon
chr11:99064508-99065023
Coord C2 exon
chr11:99065024-99065133
Length
516 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGCC
5' ss Score
7.58
3' ss Seq
CTACTGTCCCCTATTCCCAGGAT
3' ss Score
8.69
Exon sequences
Seq C1 exon
AACCTGGAGCGCAGCGGGAACCAGCACAAGGCGGAAGTGGAGGCCATCATGGAGCAGCTGAAGGAACTGAAGCAGAAGGGAGAACGAGACAAAGAGTCCTTGAAGAAAGCCATCCGAGCCCAAAAAGAGAGAGCCGAGAAGAGCGAGGAGTATGCTGAGCAGCTGCACGTGCAACTTGCCGACAAG
Seq A exon
GTAGCCGCCTCCCCGAGGAGGGCAGGCCGACGAGGAAGGGAAGGAGGGGTGGGGCGGTGGATAGGCGAGGAGTGGATGGGCAGGTGGAGGTGAAAAGCTCAAGAGAGGTGGCTGGGCAGGCAAATGGAGAAATAGATGGCAGTGGAGAGGGTGAATGAGCTGGGAGGACAGGTGGCTGGCTGGAGGAAGAGGCAGTCAGGGAGTTAACAGCTAAAAAGGTGGTGATGGGGGAGGGTGGCTGGCTGGAGACAAGTGGAGGGTTTGTGGGACATTCTAATCGCATCAGTATCACAGGTGGGAGTGATGGTTATGGATTTGCAGTCAGGGTGCATGTGATGCTGGAAACGGAAAAGTAGCATCTGGCTCCTGCTTTAGTCTCAGTGCTTCTAGAAAGGAATTGCAGGAAGGGGTTTATGTTATCAGGGTGAGGGGTGTGGCCTGGGATGACCCTCAGCTCCCTTGGCCTCAGTGCTGACACCTGACCAATGGACCCTGTCTACTGTCCCCTATTCCCAG
Seq C2 exon
GATCTTTATGTTGCTGAAGCTTTATCCACTCTGGAGTCATGGAGGAGCCGCTATAACCAAGTTGTAAAAGACAAAGGAGACCTTGAGCTGGAAATTATTGTCCTGAACGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000030567:ENSBTAT00000020325:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.516 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF115593=ADIP=PU(0.9=2.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACAAGGCGGAAGTGGAGG
R:
TCGTTCAGGACAATAATTTCCAGCT
Band lengths:
272-788
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development