RnoINT0105046 @ rn6
Intron Retention
Gene
ENSRNOG00000014584 | Odf2
Description
outer dense fiber of sperm tails 2 [Source:RGD Symbol;Acc:3229]
Coordinates
chr3:8476334-8476945:+
Coord C1 exon
chr3:8476334-8476519
Coord A exon
chr3:8476520-8476835
Coord C2 exon
chr3:8476836-8476945
Length
316 bp
Sequences
Splice sites
5' ss Seq
AAGGTAACA
5' ss Score
8.92
3' ss Seq
CTGCTGTCCTGTGTTCCCAGGAC
3' ss Score
10.1
Exon sequences
Seq C1 exon
AATTTAGAGCGCAGTGGGAACCAGCACAAGGCGGAAGTAGAGGCCATCATGGAGCAGCTAAAGGAACTGAAGCAAAAGGGAGACCGAGACAAAGAGACCCTGAAGAAGGCCATCCGAGCCCAGAAGGAGCGAGCTGAGAAGAGTGAGGAGTATGCCGAGCAGCTACATGTGCAGCTGGCCGACAAG
Seq A exon
GTAACAGACCGGCCTGCGGCCGCCTGAGGGATGCCCTGTAGTGGGTGTGGGTGAGTGAGCTGGAAGGGGTCTGGCTGGGGAATGAGGGCTGAAGATCTAGGACTAAGCAGTACCTCTGTCTTGGGGGACGGATGCCTCAGAATCTGCCCGCAGGATGCAATGTGACGTTGCCTGGGAGCTTTCTGTACCAGTCCCAGTATCCTCACACCTTGAGGGAGGCAGCAGAGGGAGGTGGCATGATGTGACTTAGCCCACCTTCCCTCCCCTCAGCCTGAGTATTGATACCTACTGACAAACTGCTGTCCTGTGTTCCCAG
Seq C2 exon
GACCTTTATGTTGCTGAAGCTTTATCTACTCTGGAGTCATGGAGGAGCCGTTACAACCAAGTTGTGAAAGACAAAGGAGACCTTGAGTTGGAGATCATTGTCCTAAATGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014584:ENSRNOT00000020073:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.504 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF115593=ADIP=PU(6.6=21.6),PF0003816=Filament=PU(2.0=8.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATTTAGAGCGCAGTGGGAAC
R:
CATTTAGGACAATGATCTCCAACTCA
Band lengths:
295-611
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]