BtaINT0105360 @ bosTau6
Intron Retention
Gene
ENSBTAG00000030567 | ODF2
Description
outer dense fiber of sperm tails 2 [Source:HGNC Symbol;Acc:HGNC:8114]
Coordinates
chr11:99074061-99074785:+
Coord C1 exon
chr11:99074061-99074191
Coord A exon
chr11:99074192-99074596
Coord C2 exon
chr11:99074597-99074785
Length
405 bp
Sequences
Splice sites
5' ss Seq
GATGTGAGT
5' ss Score
7.77
3' ss Seq
CGGCCCGTTCCTCCCCTCAGGCT
3' ss Score
9.95
Exon sequences
Seq C1 exon
GGCAGGTGGAACAAACCAAGGAGCACGCAGCCTCCAAGGAGCGAGCAGCCCAGAACAAGATCCTGGACCTTGAGACCCAGCTGAGCAGGACCAAGACTGAGCTCAGCCAGCTGCGGCGGAGCCGGGACGAT
Seq A exon
GTGAGTCTGTCTGGGGGTAGCGGGGGTGGTAGCAGACAAGAAGGGTATGGGTTGAAGGTTGAGCTTCCTGGCGCCTGCAGGGCACTGTGTTCTGTTCTTTTTATGAATATGACATGGTTTTATTTTCCTCCCATCACTTTCCCGTCCCTTCAGGATATTCCAGGCCCCTCCCCTTGTTTATTACCAGCTTTGTTAAGAGGGCATTTACCATAAAACTCTCTCATTCAGATTGTGCAATTCAGTAGTTTTGAGTACATTCTGAGTTGTGTAGTTATCACCACAATCCAGGTTGAGAATATTTTCAGAAAGAAAGCGACCCATTAGCAGCCCTCATCCCCTGGCCTCTAGGGGTGGTCTGTTCTGGGCGTCCCACACACTTGGGCCCCGGCCCGTTCCTCCCCTCAG
Seq C2 exon
GCTGATCGCCGCTACCAGAGCCGCCTGCAGGACCTGAAAGACCGCCTGGAGCAGTCGGAGAGCACCAGCCGCAGCATGCAGAACTACGTCCAGTTCCTCAAGTCGTCCTACGCCAACGTGTTTGGGGACGGTCCCTACGCTTCCTACCTGACCAGCTCTCCCATCCGCTCCCGGTCTCCTCCCACCTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000030567:ENSBTAT00000020325:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.841 A=NA C2=0.661
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGGTGGAACAAACCAAGGA
R:
TTAGGTGGGAGGAGACCGGG
Band lengths:
319-724
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development