MmuINT0112708 @ mm9
Intron Retention
Gene
ENSMUSG00000026790 | Odf2
Description
outer dense fiber of sperm tails 2 [Source:MGI Symbol;Acc:MGI:1098824]
Coordinates
chr2:29782224-29787266:+
Coord C1 exon
chr2:29782224-29782349
Coord A exon
chr2:29782350-29785989
Coord C2 exon
chr2:29785990-29787266
Length
3640 bp
Sequences
Splice sites
5' ss Seq
GATGTGAGT
5' ss Score
7.77
3' ss Seq
TGTTCTCTTTCTTCGGTTAGGCG
3' ss Score
6.96
Exon sequences
Seq C1 exon
GTGGAGCAAACCAAGGAACAGGCACTCTCCAAGGAACGAGCAGCCCAGAGCAAAATCCTGGACCTTGAGACTCAGCTGAGCAGGACCAAGACAGAACTTGGCCAGCTGCGGCGGACTCGTGATGAT
Seq A exon
GTGAGTTGGGCTAGTGGGCAGGGCTTCCTCAGGCTACTGGCACAACTGCCTGCTAGTGTTTTCATGAGTCTCACATAGGTAATTATTCCCAGTCACCTTACCATCCTTTAAGAATTAATTCTGTATAGACCTCCCTCCCCTTTTTGGTACTTGGGATTGAACACAGAGCCTTGATGGTGTTAGGCAAACTGCTACTACTGAGCTATGGCTCCTGTTACATCACTTCTTAAAATCAGAGTTACAAGATGTCATTTATACCCATAAACACTTATTGCATAGCTGAACAGTTTTTAGTGTATCCATAGACTTATGAGATTATCAAATTCCTGTTAGGGATAAAATCATGGGGTAGAGGCTATCTCCATGTGAGTACATGAGAGAGTCAAAACAAGTAAAAATAACTCTTACTCCAAGCAAGGGAAATCATGAAGATGTAAAAGAGCGCCTGAGAAGTACCCAGGAGAAAGGGTGACTCCCTGAGTAGACAGACAGCACTCACAGTGCAGGTCTGTGTCTTCTGGCCTGTGATGCTCGGGGCTGAGCCTTCAAGAGTAGGCTGACTAATAAGGAGAATCCCAAATGGGACCTGGAGAGTTGGATCAGTAGTTGTGAGCACTGGTTGCTCTTGGGTAAGACCTGGGTTTGGCTCCAAGCCCCCACGTGACGGCTCAGTCTGTAACTACAGTTCCAGGGCATCTGATATTCTCTTTTGGCTCATCAGTTAAAGGTACTGCCATTTGGTCATAGGACTGGAGTTTGTATCCCAGCATCCACATAGGAGGCCAGGCATCCCACATACACAGTGACTCTGGTCCTAAGGGATCTGTTGCCCCATTTTGCCTCTGTACACCTATGCAAACATGAAAATAAAGGTAACGTGGTCATCCTGAAGAACGTTAACTCAAACGCAAGGAAGTCGGTGATATGCCAGATGAAGATCTCAGAAGTTCAGGGGTAAAAAGTGATCTGAAGTTCAAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAAGCCTGTCTCAAAACAAAACAAAACAAAACAAAACAAAACAAAACAAAACAAAAAACAAAAAACAAAAAACAAAAAACAAAACAAAAACAGAAAAGAAATTGTGATTATGGGGAAACCCAGAAACGTTGGAAGCGACCAGATGACTTAGAAAACAGGAGAAAGCATCAGTGAAGACCAAAGCAAGCAGAAGACAGAAGCTGAGGAAAGGAGGAGGGCATGGTCAGCCAAGCCCACTCAGACATGAGCGTGGAGAGACAAGCAGTCTGCCATGCGAGCTCATAGCTTTCACTCCCCCCATTGGGAGGCAGCGGCAGATGGATGTCGGAATTTGATGCCATCCTGGTCTAGGGCAGCCAGGACTGTATAATAGAGTGACCCTGTCTCAAAAAACAAAACCAACCAACCAAAAAACCCAAACATGACCACAGTATCAGAGTCTTCTGGGATACTATTAAGAGACCAAATATAAGAACTGTCAAGACAGAAGGAACTGGAACCCTGAAGGCAGAGAGTCAAGTTGATGAGATTACACACAGATATTTATTAAAAGGGATCAACCCTCAAACTTGAGGTATTTAGAGTCACAAATGCATAGGACCCAGAAGAACTTCTCTAAGAAGTGTTATAGTCAGTATGGCAAAGCAAAAGAAGAAAGATTGACAGGTAAAGGGGTGGGGTTGTAGAGATGGCCTGAGATTAGGATTATAGAGGACCTGGGTCTCCTGCTGAGCATCCTTTTCAGGGGACTCCAGCTCCAGGGGATACAACAGCTCTGGCCACCAGACACAGCATTTATGTGTATATACTCCAAGCAAATACATACAGATATTTAAAAATAAAACTTTCAGGGCTAGCGAAATGGCTCAGCGGGTAAGAGCACTGACTGCTCTTCCAAAGCTCCTGAGTTCAAATCCCAGCAACCACATGGTGGTTCACGACCACCCATAATGAGATATGATGCCCTCTTCTAGTGTGTCTGAAGTCAGCTACAGTTTACTTATATATATAATAATAAATCCTTAAAAAAAAAAAACTTGCCAGGCGTGGTGGTGCACACCTTTAATCTCCAGCCCTTTTGTTTGTTTTTTTAACCTATAGCTGATACTGTCCTAAGTGGGAAGAAAATGACTATCTCCTTAATTTAGCTTGTTTTTAAAACAGTGTCTCACTATGTATCTCTGGCTGGTCTGGAACTCATTATGTAGACTAGGATGGCGTCAAATGCATAGAGCTCTGCCTTGGTCTGCCTCCTGAATGCTGGGATTCGTGATGTGCACTGACATGCCCAGCTCAATGGAGTGTCTGTTGTGAGGAAATGGTTAAGTGGTGACACACTTGCCACCAAACCTGATGAGCTGAGTTCCTTAGAGCCCTTATGGTGAAACGGGAAAACCATGAAGGCTGGAGAGATGGCTCAGGGGTTAAGAGTACTGGTTGCTCTTCCAGAGGTCATGAGTTCAATTCCCAGCACCCACAATGGTGGCTCACAACCATTTGTAATTGGATCCAATGACCTCTTCTGGTGTGTCTGAAGACAGCGAGATTGTGCTCACATATATTAAATAAATTAAATGAATAAATAAAGGGGAGAACCACATTCACAAATATGTGTAAAACATTTTTTTAAAGAAAATAACTGGGGCTAAACCTCAGTTGATAGAGTCCATGCTTATACATTTGAATCCCTGGGTTTAATTCCTATTAAGTATTAAAAAACAAAATCAGTCAAGGTGGTGCGTGCTTGTGACCTCAGCAGAGCAGAGGGATCCACAGTTCAACATCATTCTCAACTACAGAGCAAATTTGAGGCCAGCCTGGGCTACATGATTCCCTGTCTAAAAAATAAACAAATGATAGCATGTTTTGCTGAGGATGTGGGAGAAGAGCAGCCCTTCAGCCCTTCCCATTGCTGATGGAGCAGTACCATGCTCAGCTCTAGTCCCAGGCTGCTTGGTTTTTTTTTTTTTTTCTCTTTTTTCTTTTTTTCTTCTTTTGAGACAGGACTTCTTTGTGTAGCCCTGGCTGAACTACAACTCACTATGTACACCAAGTGTGGGTGTGCTAGAAGAAAGCACCTGGTTTCTTGGAATCACTTCTAACTAACTACATAGTGAGACTCTTTGTCAAATAATAAAATTGAACTCAGCCAGGTATGTTGACTCGGTGTATGTTGCCATAGTAACAGCACTCAGGTGGTCAAGTCAGGAAAATTGTAACTAATTCAAGGCCATGTACCTAGTCCTCTGGGCAGCTTGCTGAGGCATTAGTTCAAAACAGTTAAAGAGCTGGTTGTTGGTCGAGTATGCCTTTAACCCCCCAGCACTTCAGAGGCAGAGGGATGAAGACCTCTGAGTTCAAGGCCATTCTGACTTATAGAGTGGGTTCTGGGACAGTCAGGACTACACAGAGTAACAACACTAAAAAACACAGAGAAACCCAAAACCAAGCAACTAACTTCCCCCACCCCCACCCAAGGGGGATAAAATCCATCTCAACCCCGGGCGCTATGTGCCTCCCCCAGTGTTGGCACCTTAGAAGAGGATGCCTTTGTCTCTGATTGCCCATTGTTGCCTTCTTATTCTTGGCCCCTGTTCTCTTTCTTCGGTTAG
Seq C2 exon
GCGGATCGCAGATACCAGAGCCGCCTGCAGGATCTGAAAGATCGCCTGGAGCAGTCTGAGAGTACCAACCGCAGCATGCAGAATTATGTCCAATTCCTCAAGGCCTCTTATGCAAATGTGTTTGGGGATGCTCCCTATACATCCTCCTACCTGACGAGCTCACCCATCCGCTCCCGATCGCCCCCTGCCTGAGGCCACCTGTCCAGGGTGTGATGCCCGTGCCTGACGCCAGACAACTGTGGAGTTAGCAAACCATAGCTGGCAAGCCCACTCGTTTTCAAATGTGCTCAGGGTCTGTTCCTCCACTAATGCCAGGAAGGCTCCTAGAGCAGCCAGGGATGAGTCAGGAACAATCTGGTTATCTTTCCTGACCTGGGAACCTGGTGGAATTCTCTAATCCTCACAGCCGTGCATTTGCCACATTAGGTACCAGATTTTGAAATCCCTGGAACTTTACATACAGAGTCTGCTTCCTTTCCTCAGGGAATGTTTGGACGGACTGTTCCATGCAGACTCCTTCCAGCCCTCCTCTTTCCAGGCATCTCTCTCTTGGGGTTTTTTGAGCTAAAGTTGCAGGAATCCTTCTCCACTGAATGCCTACATTGCCTTTTCTTTCCTTTTTATTTATTTATTTTTTATTTTATTTTTTTAATAAAAATAGAACTTTATTTGTATCAAGAAATAGTGAAAACAGGTAAATTAGTATCTGAGGTAAATTAGTCAGGGCTCATGGAGATGAGATGTTCACGGCTCCCTTGCTCCTGTGGAATCTGTAGCTACGAATGTCATGAAAATAAATACATTGTTTGCGTCCCTCATTACATAGCAACTGGCATAGTCCCAGCTACAGCAGGTGTGTTCACAATGAACTGTTTGGACACAGACCTAACAGTGGCAAGTGTGCTTGTAACCATGTGGTCTGGTTTCACAGTTCTGGGAACTGCAACTCCCAGCCTCTTACTCCAGGAACAATACCCAACGGTGTCATCCTTGCGCAGGGGCCATGGTGATCTGTATTGTTCCAGCTGTAGTGGATGCTCTGCTGAAGGGGAGTCAGCTTTTCTCCTCCTGGTGGGTCCTGCAGGAAGCAGTGTTCTCCTTGGTGCCCGGGGAAACCTCCCATGTCTGTTTCCTATAGGCCACTTGTTCCTCACGACCATCCGGCCTGACAATCAGAATTCCTATCTCATTGCTTGTCAGTTCTCTTTGTATCTCTGGGATTCCTTTATTTTTGAAATTTTTGTGTGGTTTTACAGGAAATAAAGTTTGTATCACTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026790-Odf2:NM_001113213:20
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.762 A=NA C2=0.651
Domain overlap (PFAM):
C1:
PF103944=Hat1_N=FE(22.0=100),PF087025=Fib_alpha=PU(12.7=19.0)
A:
NA
C2:
PF103944=Hat1_N=PD(15.6=45.3),PF087025=Fib_alpha=PD(84.1=82.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: