BtaINT0105378 @ bosTau6
Intron Retention
Gene
ENSBTAG00000012907 | ODF2L
Description
Bos taurus outer dense fiber of sperm tails 2-like (ODF2L), mRNA. [Source:RefSeq mRNA;Acc:NM_001075993]
Coordinates
chr3:57835064-57838298:+
Coord C1 exon
chr3:57835064-57835249
Coord A exon
chr3:57835250-57838188
Coord C2 exon
chr3:57838189-57838298
Length
2939 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
GTACTTTATGTATTTTTTAGGAA
3' ss Score
9.94
Exon sequences
Seq C1 exon
AGCTTAGAAACCCAAATATCAGAATGGAATTTGCAGTTGAAAAAGAATAAGTATGAGGCTGTAGCAATGAAAGAATCAAGTAGGCAAAAAACTATTGCTCTAAAAAAGGCATCTAAAATTTACAAACAAAGGATTGAACATTTTACTGGAGACATGGAAAACCTTACTTCCCAAATTAGAGAGCAG
Seq A exon
GTGAGTTATATACATTCTTCCTTAAAGAATTGTTTTATGTACTTAGTTTATGTACTTAACTTCATAACACTTAGTATAATTATCTTGTTAGAAAAACTTTACTCATACTAATTTTGCTTTCGTGTTTATTTTGAAAGATTACATAAAGTGACAGATTTGCATTTTGAATTACATCAGCGTTTCCTTGGGACTTTGTTTAAAGGATGTGTAAGTTCCAAAGCACCTGTGATTACATTGGCTTGTACCACTTCATACATGTTCACCCTTGGAAATTTACATTGCATATTAACGTTAAATTAAAGTACGTTAACAAAGGCTCTGAGAAGGCCTTCAACGTCAAGGAGGGTATTGAATTCAGAGTTTTCCACCACTTAGTTAGCTGCAGAATTCTTTTATTCACAAAGTAACTCTTGGAACTGATTCTGAGGAATGCTGCTGCTGCTGCTAAGTCGCTTCAGTCGTGTCCGACTCAGTGCGACCCCACAGACGGCAGTCCACTAGGCTCCTCTGTTCCGGGATTCTCCAGGCAAGAATACTGGAGTGGGTTGCCATTTCCTTGTCCAATGCATGAAAGTGAAAAGTGAAAGTGAAGTCGCTCAGTTGTGCCTGACTCTTAGTGACCCCATGGACTTGAGCCTACCAGGCTCCTCTGTCCATGGGAATCTGAGGAATACCAGTTTGGGAAATGCTGATTAGTATTATTAGACCATATGACTTTATTCAGTAATTCACTTCACTTAAACTCTATAATATATTTAAATACATGTGCTGATGTAAACCCACCATGTGAAAGTTATCTTTGGGTTTATTAACAAAGTTGAAAATTGACTTAGTGCTTTGTTTTTGATGAATTGTGTTTATTCAGTTACCAAGTAATAAAATATTTACTCTTTTTAAGTATCATTGGTATCCCAAATCTTAAGAACTTAGATACGAATGAAATGAAAACAGACTTGCATAAATGGTCATATAAACAAAACAACCTAATGTTTTATAAGCTCAACTGTGAACATTTTAAAACTCTTAATATTTAACCTACATTCAGAAGAATTTAATTAGATAAAAGACTTGAGGACTAAGTGCAAAATCTGTAAGGCTGAAGGCCTAGCTGAAAATATTCCTGTGTGTTAAAAACTAATTGAGTCATTAACATTCTTGGGATTTCCTTTTAACTAGCACGATGTCACTCTTGCCCCAGATCATAGTATAGGAAGACTTTGCCACTTGTTAACCTGGTGACTTTGGGTAAGGTACTTAACCTCTCTAAGCTTTAGGCTCTTTATCTATCAAATAGGGGATAATAATACTGCCTGTCTCCTATAGGAATAAATGAGAAAATATATGTCAAAGCACAGTGTCTGTCAGACTGCATTTTTGCCACATTAACCTCCTTTCTATTCCTCTAATGTGGGTATTGTGTTTGTTTCACTGTTCTATGCTGTTGCCTCTGGCTGTAATGTTCTTCTCAGGTTCTATAATAGCTGATTCTTTTAAAAATCACTCTGGTATCTTTTTACTTGATATCTCTACTTGATATCTCTTCACACGGGCCTTCCTTGACTGCTCCTTTTGAAATAGCCCCACAACAGTTAATCACATCAATGTCTTAAATTTTTTTCTTAGCGCTTATTTTATAGGCAAAATTTCTAAATATCTTAATTTATATTCTAATATAATTGCCAAACATATCCTTCATAGTGCATATTAACATTCATTTACATGTAATATAAAAACAGAATACTAGTCTTTTTTAAATACATTAAAAAGATTACTGTAAAAATGTAAAAAAAAAGTCTCGCACATAGTAAATGTTGAATAAACACTTGTTCAGTGGTAGGAAAGAAGGAAGCACCCAATAAATGTAAACTGCTCATATCACTACTTCTAAGTCTTCTGATTAGTAATTATTGGCACCCTTGTCATTCTAGTGAATTTGTCTTTCTTTAGAGAGGGGTACAATGGCTACAGCTCTTTAGGTGAATTTGTAAAGAGTAGATTCATTTGACAGTTATTTGTTGAGAGTCAGTAGAGTGATCTATACAGAATAGCTTGACATAGAACTATCATATGACCCAGAAGTTTCATTCCTGTATATTTATCCAAAAAGGCCCCAAAACCCAAAAAGCTAATTTAAAAAGATATGTAGCCTAAAGTTCATAACAACATTATTTATGATAACCAAGATATGAAAACAACTGCTGCTGCTGCTGCTAAGTCGCTTCAGTCGTGTCCGACTCTGTGCGACCCCATAGACGGCAGCCCACCAGGCTCCCACGTCCCTGGGATTCTCCAGGCAAGAACACTGGAGTGGGTTGCCATTTCCTTCTCCAGTGCGTGAAAGTGAAAAGTTAAAGTGAAATCTCTCAGTCGTGTCCGACTCTTAGTGACCCCATGGACTGCAGCCTACCAGGCTCCTCCATCAATGGGATTTTCCAGGCAGGAATACTGGAGTGGGGTGCCATTGCCTTCTCCAGTGAAAACAACTAAGTATCCATTAACAGATGACTGTATAGAGAAGATGTAGTGTATACACACACAGGAATATTCCTCAGCCATAAAAATGAACTTTTGCCATTTGCAACAACATGGCTGGACTTGAAGGATGTTCTAAGTGAAAGAAGTCAGAGAAAGACAAGAATTCAGTAAATATAAAGGGAATTATCTTCAGTAATTATGAAACATTTTTTTAAAATAGGTGTGTTAACATCCTTAAAATGTTGTTAGAACTGTTATTATATGCATATAAAGTAATAGTGTTATAAAGTCATTATTAAAATTTACTTTAAAGTTTTCCTGCATTCAGATTTGTACACTGAAATTTTCTGTAACAAAAGTTCCATAACTTATAGGATGAGTGTTTCCTTGTTAATAATGTATTTGTTTTTAGGACAAAACTAGTGTTATTAAATTACAAGATGAGTACTTTATGTATTTTTTAG
Seq C2 exon
GAAGCCAAGTTGTCTGAAACAGTTTCAGCTTCCAATGCCTGGAAAAGTCATTATGAGAAAATAGTAATAGAGAAAACTGAGTTGGAAGTTCAGATCGAAACAATGAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012907:ENSBTAT00000017157:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.081 A=NA C2=0.054
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF115593=ADIP=PU(22.5=78.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]