MmuINT0112732 @ mm9
Intron Retention
Gene
ENSMUSG00000028256 | Odf2l
Description
outer dense fiber of sperm tails 2-like [Source:MGI Symbol;Acc:MGI:1098600]
Coordinates
chr3:144795596-144798698:+
Coord C1 exon
chr3:144795596-144795781
Coord A exon
chr3:144795782-144798588
Coord C2 exon
chr3:144798589-144798698
Length
2807 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
AATGCATTATGTGTTCCTAGGAA
3' ss Score
7.2
Exon sequences
Seq C1 exon
AGCTTGGAAACCCAAATAGCCAAGTGGAACTTGCAGGTGAAAATGAATAAGCAAGAGGCTGTAGCCATCAAGGAAGCAAGTCGGCAAAAGGCTGTAGCTCTGAAAAAAGCATCGAAAGTGTACAGACAAAGGCTGCGACACTTCACAGGGGATATCGAGCGCCTCGCCTCCCAAGTCAGAGATCAG
Seq A exon
GTGAGTGTGCATGCTCTTACAGATAGAGGATGCTACCTGTGCTTAGAGTCAGTAAGAGAGCAGGGTTACAGTTAGCAGGGTTAGATAGCATAGTTAGATAGACTGGTTGGCAGAGTTAGATAGTATGGTTAGTTAGACAACATAGATAGTTTAGGGAGCATAGTTATATGGATAGCATAGTGACTGTACTTATCAACTTTAGTTAGGTAGCATAGTTATCCTTAGATGGCATAGTTAATTCGCATAATTAGCATTGTGAAGCTTTAAATAATGGTGTCATTCTTATCCTTGTTACTATTAATGTTATAAAATTTGCTCATCTTTTTTGCTTTGGACTTTTATTTTGAATTGTGTAGCACTTTTGGGGCTACTAAAAGGAGATGTGAGTGTATGCAATACCCACTCCCCAACACACACATTCAAAGCTTCTATGGCAGGTAAGGATAAGCCTTCCTCCATCTTGCCTACTGGAAAGTTACAGTGCGTATTAACATACTAAAGGCCTGAAAAGGCTTTCAGAATGCAGTAATGAGGGCATGGAAGGAAGAATTCCCACACTTAACCACAGAACTCTTCTTGTACCCACAGAGCAGCTCCTGGAACTGGTTCTGAGAAATATCAGTTTGGGAAATGCTGATTTATGTTATTAGACCATATGACTTTATTCAGTAATTCATTTAACCTCTGTAATGCATTTGAAACCATATGCTGACGTAAACAAAACATGTGAAAGATATCTTTGAGTATAATACAGAGCTGAAAAATGGAGTTAGTGCTTTGTTCTTCTTGACAAATCATTATTCTTATTCAGTTGCCATCCAATAATATATTCTTTGTTTCCATGTCTCACTAGTATCCCACCTCTTCAGAACGTATGCTAAGGCTTATAGGTTTATTAGTAGTTTGTGGGAATGAAAACAGACTTGTATAAAAGCTTGTACAAACAAAACAAGTTAATATTTTATAAGCTCAAATGTTACCATTTTAAGGCTCTAATACTTAACTTACGTTCACTTGAGTACAACTAGATATTAGAATCGAAGGCTAGGCTCAACTTGTATAAGGTGGGACCTGGCTGGATACCTAGAGATGCTTAGAGTGCTGGACACTAATCATGACACTGACGCTCTTGAGGGTTTCCCCCTGAGGTAGCTTCACCAAGTCCCGTGCAATTTAGGAAGGTTCTGCACTTGTTAAGCCTGTGACGTATAAAGGGCACTTAACCTCTCTGACCTTCTACCTCTTTATGAGCGAGGGGATGAGAACACTGCTTACCTCAGGTAGCTGTAGGAGCATGTGAAAGAAACAGTGGGGCTGCTACATGCTGTCCCCTTTGCACCCCTCACTGTGTGGAGCTGGCTGCTCTGTTAATGCGCTGCTGCCTCTGGCTGTAAGTGCTTCTTGCTCATTGTCATTGGCTCTTTCCCATGTTAATCAGTGGCTCTTCCTCCAGAGAAAGTCTTCCCTTACTACTCTTTAAGTAGCAGACCTTTAACAATGAACAATATTAATGTTTTAATTTTTATGGTATGTATTTCATTCTGAAGCTACCTCATGGTTTACTATTTCTCCTCCTCCTTAAGTGTATCTAAAGCTTGAAACACAAATGGGTCCAACACTGAGACATTTCATTGAGTTCCTGTTTGCTTTATTGCATGTCTACATGCATTACAACGAGGACGGGGTTTGCAAGGAAGGGATGTGAGGCCCATTAATTAGGAGGCTGCAACAGGACTAGTTCCAGTGCAGTGCAAGGTGAGGGACTCTTGCTCTGTGTCTTTTTATAAGGACAGGTAAAAGAAGAATGAGGACTTTAAATATCTAATATACACATTTCTTACTCATTTTTAATTCCATGTTGTCACACATTATATATTATAATAGAAACTACCTTTACAGTATATGTTATGCCTATCTCTTGCTTCATAATTTATACTAAAATTTATTTTACACAAAATGTGAAATCTGGGTCTAGTCCAGTATAACACACATTGCTGTGAAAAGCATAGACAATATCTTGTATATACAAGATGACCTATGCATGAATGATAGAAGGACAGAGGAAAATAGTATGTTAACTGCTGTCCAAACCATTTCTGGGTCCTCTGATGTGTGAGTAACTGGCATCCTGTTTTTCTGTGGAATGTGGACAAAGGCAGAGAGGCTAGAGCTTTGAGGTTAGATCTGCAGAGGGCTACTGACATTTATTTACTGAGTGTGTGCTGTCTTCCTGGAGCCATTCAGAACCCTACAGACGGCAATGAACCAAACAGACAAAAATCCTCCTTTGTAACTCTCATGTTCACACTGGCTCAGGCAGTGCTGCTGCCCCTCTTTGCTGACAGCAGCCGCATAGTCAGGCTGACAGTGACCTCTGCAAAGACAACTGAGCATCTGAGATGCTGTGAGGCTGGGGAATTGCAAATGGTTTTTATATATTATGGGAAACTCTTTTTCTCACATGTATGTGGTTCTTATGTATAAAGAATGGAAACTGAAGATGAATTCATACACATACATAAAATAGAAGTTATTTCTATTAATTGTGAAGTATTACTTATAACTAGTCATAAGAGCTTTTTTGAAATGGTAAGTTGGAATTTTACTGTGTGCATATAACATAATAGTCATGTAGGTATTTTATTAACGCTCACTTTAAAATTTTACTATAATGAAAGCTGCACACTAAGAACAGTTGTGTGCTTTACTAGAAGAGTGTTTTCATATTTATAATGTATTTGTATATAAAACCTGAAAAGAAAACACACACTTTTAAGCGACAAGCTGAATGCATTATGTGTTCCTAG
Seq C2 exon
GAAGCCAAGCTGTCTGAAACAGTTTCAGCTTCCAGTGACTGGAAAAGTCAGTTCGAGAAAATTGCCATAGAAAAAACTGAGCTGGAAGTGCAGATCGAAACAATGAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028256-Odf2l:NM_001162538:8
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.015 A=NA C2=0.037
Domain overlap (PFAM):
C1:
PF039809=Nnf1=PD(8.9=11.4)
A:
NA
C2:
PF074396=DUF1515=PU(17.7=37.8),PF115593=ADIP=PU(13.9=51.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: