GgaINT0038670 @ galGal4
Intron Retention
Gene
ENSGALG00000006804 | ODF2L
Description
outer dense fiber of sperm tails 2-like [Source:HGNC Symbol;Acc:HGNC:29225]
Coordinates
chr8:14941280-14942828:+
Coord C1 exon
chr8:14941280-14941465
Coord A exon
chr8:14941466-14942718
Coord C2 exon
chr8:14942719-14942828
Length
1253 bp
Sequences
Splice sites
5' ss Seq
CGTGTGAGT
5' ss Score
7.42
3' ss Seq
GTAATTAATGTGTTCTGTAGGAA
3' ss Score
6.75
Exon sequences
Seq C1 exon
ACTCTAGAGAAGAAAATAGCAGAGTGGAAACTTCAAATTGGTGAATACAAGCGTCAGATGTTGGCCTTGAAGAAAACAAGTGAGCAAAAAAAGGCTTATCTGAGAAGAGCAATTAGGTCCCAGAAACAAAAAACAGAATGCTTTGAAGAAGCTGTGGAAAATTTAACCTCCAGAGTAAAAGAACGT
Seq A exon
GTGAGTGATTACACTGACCAATGTTGTCCTGCATTAAATTGAATGAATAATTGGGAAACTTTCACCTTTGTAAAATAGGAAAGTTTTCTGTTGCATCGTTTGCATCTCTTATTTTTTTCCTCAGTTAAGGAAAAGCTTGCTATAAGAGACATGAAAACCATTCTTGTACTCACTGTTTTTGTTTTGTTAAAATTTAGTGAATGTCTTTATGCAGTTGTATACTTCATAGTAAATAAGTGGAGTCTGATCAGCTTCATTTATACATGTTCTGATCCTTCTCTTAGACCTTTGTGGAGATGCAATAACTGAGCTTAAAAGTATGATATAGCGTCAGATAAGAACTGGGGCTGAAGTCTTTGTGTCCTTTATTTATTAGCCTACGGTGTCTCATACGGATGCTTAGCTTTCTATTTCCAAGCTGCTTGCTTTGAGCTTTTTTAATATCCAAGCATATAACTTTAATTCAAATTGTTGTGTGGCTTCTACCTTGCCCGTCACCTGTGCACAGTGTGTAATTTTTGGAAAAAGTCAGGTGGATCGGGACTGTGCTAAGACCTCTGTCGACTTATTTAGATTTCCTAATAAGAGTGTTCTCACAACTTTTGTGCATTGCCATTGTTTAGGATTTGCCTGTATTATAAGGATATTTTTCCAGTTAGTATATCTGGAGATGGCTAATAATTTGTTTTGTTTCCTTTGATCTCTGTAAGAAGTTACATTTAGCAGTCCAGAGGAGTAGCATTTGCTTACCTCTTGAACTGGTAGTGTTTTGTATTCATACTGTTGTTTTCTTCCCATTGAAGACCTTATTTCGTTTCAAGATAGTATGCTGGTTAATGCTGGAATTTATGTAACCTTGCATTTCTTATATAGCTATATACTTTTTTAATCCTTAAAATGCTTTGAGAGAATTTTATTTTGGTATTAACTTATACTGTTTATAAGTAGAACAGATGTATTGGAGGCATTTTTTTTTAAGGAGTATTTCATCTTAAATAATGGTACATTCTGAAGCTGGTATAGAGAACCCGTGTTTAACTGTGTCTATACTTGGAAAATAAGTTTGTATTACACTTTATATTTTTTAAATGTGTGTAGTTTATTTGTTCTCTTTTTGAGATTAGATGAAATTTACACTGCTTTGTACTAGAGAGTTCCAATAAATAGCTCTTGTTTAGAAGATTTTGTAGAACAAGATGGTGCTCCTTATGGCATCCTTATGATACATGATTTGTAATTAATGTGTTCTGTAG
Seq C2 exon
GAAGTGAAATTGTCTGAGATACTGTCAGCTTCTGATGTCTGGAAAAAACAACATGATAGAATGGTAGAAGAAAAGACAATGTTAGCAGTTCAGACAGAAGACCTAAAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006804:ENSGALT00000038838:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.048 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTAGAGAAGAAAATAGCAGAGTGG
R:
TCTTTAGGTCTTCTGTCTGAACTGC
Band lengths:
294-1547
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]